New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1603798	35 (0.630)	12 (0.220)	7/128	2.3	25.8%	coding (780/1029 nt)	lsrC	Autoinducer‑2 ABC transporter membrane subunit LsrC
	?	NC_000913	1603802 =	34 (0.620)					coding (784/1029 nt)	lsrC	Autoinducer‑2 ABC transporter membrane subunit LsrC

GCCTGCGTGCTGGGCGGCATTAGTTTGCTCGGTGGTTCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1603757‑1603798 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCATTGGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGTACTGGTGCTGTTGC  >  NC_000913/1603802‑1603865                                                                                                            GCCGGCGTGCTGGGCGGCATTAGTTTCCTCGGTGGTCGCCGTATCATTGGTGCGGTACTCGGCGC                                           <  1:2384608/65‑1    TGCGTGCTGGGCGGCATTATTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATG                                        <  1:2338709/65‑1      CGTGCTGGGCGGCATTAGTGTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGT                                      <  1:4421838/65‑1                GGCATTATTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCA                            <  1:2648206/65‑1                  CATTAGTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTTACGCAGA                          <  1:3266865/65‑1                  CATTAGTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGA                          <  1:1039413/65‑1                       cagTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGAT                     <  1:4250372/62‑1                            CTCGGTGGTCGCCGTATCATTGGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGT                <  1:2448736/65‑1                            CTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGT                <  1:2296271/65‑1                            CTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGT                <  1:2430000/65‑1                                       ccGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGTACTGGTGCTGT     <  1:1571910/63‑1                                          TATCATTAGTGCGGTACTCGGCGCATAGTTCCTGACGCAGATCGATAGCGTACTGGTGCTGTTGC  <  1:477243/65‑1                                                                                                            GCCTGCGTGCTGGGCGGCATTAGTTTGCTCGGTGGTTCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1603757‑1603798 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCATTGGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGTACTGGTGCTGTTGC  >  NC_000913/1603802‑1603865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.