New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1979270NA (NA)66 (1.140) 32/128 0.1 43.4% noncoding (1/768 nt) IS1 repeat region
?NC_000913 = 3844020 86 (1.480)coding (57/1767 nt) adeD adenine deaminase

AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1979207‑1979270
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAATTATTCATATTTTTC  <  NC_000913/3844020‑3843957
                                                                                                                                
AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                 >  1:2978738/1‑65
  AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTg                                                               <  1:4067635/65‑2
  AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTC                                                               <  1:3805185/65‑1
  AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTC                                                               <  1:4432238/65‑1
   AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCC                                                              >  1:1062235/1‑65
   AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCC                                                              >  1:2719756/1‑65
   AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCC                                                              >  1:704174/1‑65
    GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCT                                                             <  1:4270515/65‑1
       ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGT                                                          <  1:3253899/65‑1
       ACTGGAGCACCGCAAAAACACCATCATACACTAAATCAGTAAGTGGGCAGCATCACCTTCCTGGT                                                          <  1:3681368/65‑1
        CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTA                                                         <  1:2969373/65‑1
         TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTAT                                                        <  1:2338/65‑1
          GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATT                                                       >  1:2049915/1‑65
            AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCA                                                     >  1:2754450/1‑65
             GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAG                                                    >  1:4430606/1‑65
             GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAG                                                    >  1:4237834/1‑65
             GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAG                                                    >  1:4411871/1‑65
               ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCC                                                  >  1:1292658/1‑65
               ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCC                                                  >  1:4177403/1‑65
                 CTCAAAAACCCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCG                                                <  1:3469952/65‑1
                  TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGG                                               <  1:1411637/65‑1
                  TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGG                                               <  1:3574412/65‑1
                       AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTCGTATTCAGCCCGGCTAAT                                          >  1:104373/1‑65
                         CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGT                                        >  1:87833/1‑65
                          ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTG                                       >  1:1209838/1‑65
                          ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTG                                       >  1:2266727/1‑65
                          ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTG                                       >  1:1151630/1‑65
                          ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGCATTCAGCACGGCTAATGTG                                       >  1:3561133/1‑65
                                ATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAA                                 >  1:3993751/1‑65
                                ATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAA                                 <  1:527599/65‑1
                                ATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAA                                 >  1:4469922/1‑65
                                ATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAA                                 <  1:1960310/65‑1
                                  ACACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATT                               >  1:292799/1‑65
                                    ACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTATTGTGATGAAATTTA                             >  1:3091834/1‑65
                                    ACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTA                             >  1:1674833/1‑65
                                    ACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTA                             >  1:4192811/1‑65
                                    ACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTA                             >  1:783655/1‑65
                                    ACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTA                             >  1:2537632/1‑65
                                    ACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTA                             >  1:2549234/1‑65
                                    ACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTA                             >  1:4282276/1‑65
                                    ACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTA                             >  1:3592974/1‑65
                                    ACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTA                             >  1:1116212/1‑65
                                    ACTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTA                             >  1:1497793/1‑65
                                     CTAAATCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTAT                            <  1:602427/65‑1
                                          TCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTA                       >  1:2853587/1‑65
                                          TCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTA                       >  1:2919518/1‑65
                                          TCAGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTA                       >  1:1871147/1‑65
                                          TCAGTAAGTTGGCAGCATCACCCTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTA                       >  1:35471/1‑65
                                            AGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAAT                     >  1:2733413/1‑65
                                            AGTAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAAT                     >  1:1482423/1‑65
                                              TAAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAG                   >  1:1522856/1‑65
                                               AAGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGA                  <  1:244174/65‑1
                                               AAGTTGACGGCAGCACCTTCCTGGTATTCATGCCGGCTCATGTGATGAAATTTATGGTTAATAGA                  <  1:3145697/65‑1
                                                AGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAA                 >  1:1560793/1‑65
                                                AGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAA                 >  1:404735/1‑65
                                                AGTTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAA                 >  1:3189257/1‑65
                                                  TTGGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAATT               >  1:1741739/1‑65
                                                    GGCAGCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAATTAT             <  1:2573088/65‑1
                                                        GCATCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAATTATTCAT         >  1:1009231/1‑65
                                                           TCACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAATTATTCATATT      >  1:548642/1‑65
                                                             ACCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAATTATTCATATTTT    >  1:901003/1‑65
                                                              CCTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAATTATTCATATTTTT   >  1:545997/1‑65
                                                               CTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAATTATTCATATTTTTC  >  1:1949588/1‑65
                                                               CTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAATTATTCATATTTTTC  >  1:2519227/1‑65
                                                               CTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAATTATTCATATTTTTC  >  1:3297193/1‑65
                                                               CTTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAATTATTCATATTTTTC  >  1:3171514/1‑65
                                                                                                                                
AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1979207‑1979270
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCTGGTATTCAGCCCGGCTAATGTGATGAAATTTATGGTTAATAGAATTATTCATATTTTTC  <  NC_000913/3844020‑3843957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.