| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 37 (0.690) | 13 (0.280) | 8/116 | 1.7 | 23.4% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 53 (1.150) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
AGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4542619‑4542690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggccaTTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTAT < NC_000913/4542986‑4542920 AGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGG > 1:1219706/1‑68AGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGG > 1:1469096/1‑68AGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGG < 1:1521346/68‑1 AGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGC < 1:1530541/68‑1 AGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAT < 1:3490393/68‑1 AGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAT < 1:3222449/68‑1 GAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAAACAAATAAATACAAGACAATTAGGGCCAT < 1:1440058/68‑1 GGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCATTTT > 1:1086091/1‑68 AACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGA < 1:150281/68‑1 TTGATAATAAAGTT‑AAAAAAACAAATAAAGACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAG < 1:3606176/68‑1 AAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGA < 1:3119207/68‑1 AAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTT > 1:1106251/1‑68 AATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGT < 1:1081972/68‑1 ACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGC < 1:1776621/68‑1 ACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGC < 1:1880005/68‑1 ACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGC < 1:1369200/68‑1 ACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGC < 1:2736274/68‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCTCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:144379/68‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:1706931/68‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT > 1:1250492/1‑68 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:3662309/68‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:2901078/68‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT > 1:3835393/1‑68 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:959748/68‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:2006204/68‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:1034991/68‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:1703845/68‑1 GGGCCATTTTGACTCATAGAGGGAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:274360/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGGTTAATAT < 1:3065830/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:696725/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:764795/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:982803/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT > 1:3509265/1‑68 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:257798/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:2386603/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:1786495/68‑1 GGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATT < 1:3228432/68‑1 ATTTTGACTCATAGAGGAAAGCATCGCGGACAGACTTTTTCAGGTTATTTGTTGGCTTAATATTCTAT < 1:2573807/68‑1 ATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTAT < 1:3442358/68‑1 ATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTAT < 1:2900132/68‑1 ATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTAT < 1:699552/68‑1 AGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4542619‑4542690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggccaTTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTAT < NC_000913/4542986‑4542920 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |