| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 37 (0.690) | 13 (0.280) | 8/116 | 1.7 | 23.4% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 53 (1.150) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
AGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAA > NC_000913/4542624‑4542757 | agagGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:2625169/68‑1 (MQ=255)agagGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:2248002/68‑1 (MQ=255)agagGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAt < 1:3490393‑M1/68‑2 (MQ=255)agagGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAt < 1:3222449‑M1/68‑2 (MQ=255) gagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAAACAAATAAATACAAGACAATTAGGGCCAt < 1:1440058‑M1/68‑2 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt > 1:1086091‑M1/1‑64 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt > 1:855774/1‑68 (MQ=255) tttGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt > 1:2078094/1‑68 (MQ=255) tttGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt > 1:1585138/1‑68 (MQ=255) tttGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATGGGGGCCAAACTGt < 1:859520/68‑1 (MQ=255) tttAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata < 1:2253831/68‑1 (MQ=255) tttAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata > 1:3307766/1‑68 (MQ=255) tttAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata > 1:1594678/1‑68 (MQ=255) tttAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata > 1:903998/1‑68 (MQ=255) tttAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata > 1:1416916/1‑68 (MQ=255) tAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc < 1:434154/68‑1 (MQ=255) aaCTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcataga < 1:150281‑M1/68‑15 (MQ=255) aCTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat > 1:1348392/1‑68 (MQ=255) cTTATTGCTAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata > 1:595890/1‑68 (MQ=255) cTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATcctg > 1:3791460/1‑65 (MQ=255) cTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata > 1:2989017/1‑68 (MQ=255) ttGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:1095473/68‑1 (MQ=255) ttGATAATAAAGTT‑AAAAAAACAAATAAAGACAAGACAATTGGGGCCAttttgactcatagaggaaag < 1:3606176‑M1/68‑21 (MQ=255) gATAATAAATTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg < 1:1904747/68‑1 (MQ=255) gATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg > 1:1559030/1‑68 (MQ=255) ataataAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt > 1:4046401/1‑68 (MQ=255) ataaAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTAc > 1:844473/1‑68 (MQ=255) aaGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgga < 1:3119207‑M1/68‑30 (MQ=255) aGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt > 1:1973530/1‑68 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttt > 1:1106251‑M1/1‑31 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt < 1:1081972‑M1/68‑44 (MQ=255) ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaa > 1:1608804/1‑68 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat < 1:2000851/68‑1 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat > 1:74884/1‑68 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:2736274‑M1/68‑56 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:1880005‑M1/68‑56 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:1776621‑M1/68‑56 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:1369200‑M1/68‑56 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa > 1:195149/1‑68 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa > 1:2967156/1‑68 (MQ=255) aTTGGGGCCAAACTGTCCATATCATATATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaa > 1:3905730/1‑68 (MQ=255) aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaa > 1:3934951/1‑68 (MQ=255) aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaa > 1:2845174/1‑68 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatctcggacaaactttttcagtttatttgttggcttaat < 1:144379‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:2901078‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:1703845‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:1706931‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:2006204‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat > 1:1250492‑M1/1‑8 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:959748‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:3662309‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat > 1:3835393‑M1/1‑8 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:1034991‑M1/68‑61 (MQ=255) tGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc > 1:2435768/1‑68 (MQ=255) gggCCAttttgactcatagagggaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:274360‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttgggttaatat < 1:3065830‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:982803‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:764795‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:696725‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:257798‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:1786495‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat > 1:3509265‑M1/1‑6 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:2386603‑M1/68‑63 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatatt < 1:3228432‑M1/68‑64 (MQ=255) ggCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc > 1:1765853/1‑68 (MQ=255) ggCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc > 1:280723/1‑68 (MQ=255) ccAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAATGACaa > 1:2078120/1‑68 (MQ=255) ccAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa > 1:497319/1‑68 (MQ=255) ccAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa > 1:3497946/1‑68 (MQ=255) ccAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa > 1:2492178/1‑68 (MQ=255) attttgactcatagaggaaagcatcgcggacagactttttcaggttatttgttggcttaatattctat < 1:2573807‑M1/68‑68 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctat < 1:699552‑M1/68‑68 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctat < 1:3442358‑M1/68‑68 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctat < 1:2900132‑M1/68‑68 (MQ=255) | AGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAA > NC_000913/4542624‑4542757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |