| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2068944 = | NA (NA) | 6 (0.120) | 6/128 | 2.4 | NA | noncoding (1328/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 2070275 | NA (NA) | intergenic (‑95/‑2) | insC‑3/yoeA | CP4‑44 prophage; IS2 insertion element repressor InsA/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA | |||||
CATCCCCGGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGA > NC_000913/2068877‑2069006 | cATCCCCGGAGTAGAGATAACAGACAACTCCTAGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGa < 1:3194307/68‑1 (MQ=255) gTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCta < 1:3699734/68‑1 (MQ=255) agagATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGGCCCtcta > 1:3985617/1‑68 (MQ=255) gaTAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTtttttt > 1:1445862/1‑68 (MQ=255) gaTAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATAttt > 1:2000102/1‑68 (MQ=255) gaTAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATAttt > 1:56524/1‑68 (MQ=255) gaTAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATAttt > 1:1911857/1‑68 (MQ=255) gaTAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATAttt > 1:1553970/1‑68 (MQ=255) aTAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTc > 1:1162544/1‑68 (MQ=255) tAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTcc > 1:1294543/1‑68 (MQ=255) aCAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAg > 1:1057179/1‑68 (MQ=255) aCAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAg < 1:1697941/68‑1 (MQ=255) aCAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAg > 1:1477133/1‑68 (MQ=255) cAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATTTTTCCCGa > 1:3622337/1‑68 (MQ=255) cAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGa > 1:1477990/1‑68 (MQ=255) gACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACa < 1:531824/68‑1 (MQ=255) gACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACa < 1:3198973/68‑1 (MQ=255) gACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACa < 1:3014177/68‑1 (MQ=255) aCTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGTCCCTATATTTCCAGACATCtc > 1:3940048/1‑67 (MQ=255) aCTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTg < 1:1605034/68‑1 (MQ=255) aCTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTg > 1:272079/1‑68 (MQ=255) aCTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTg < 1:4069059/68‑1 (MQ=255) cTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGt < 1:2243552/68‑1 (MQ=255) cTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGt < 1:2273184/68‑1 (MQ=255) cTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGt < 1:733811/68‑1 (MQ=255) cTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGt < 1:1769596/68‑1 (MQ=255) cTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGt < 1:1768911/68‑1 (MQ=255) cTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGt < 1:833244/68‑1 (MQ=255) cTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGt < 1:1690538/68‑1 (MQ=255) cTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGt < 1:648151/68‑1 (MQ=255) cTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGt < 1:35317/68‑1 (MQ=255) cTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTGCCAGACATCTGt < 1:232354/68‑1 (MQ=255) cTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGATGGATTTGCCCCTATATTTCCAGACATCTGt < 1:468236/68‑1 (MQ=255) cTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTCGCTGGATTTGCCCCTATATTTCCAGACATCTGt < 1:3980737/68‑1 (MQ=255) cTCCTTGGCAAGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGt < 1:2239494/68‑1 (MQ=255) tCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGtt > 1:609611/1‑68 (MQ=255) ccTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGttt > 1:1908893/1‑67 (MQ=255) ccTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTa > 1:3782811/1‑68 (MQ=255) ttGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATc < 1:163613/68‑1 (MQ=255) tGGCAGGCCGTAAACAAATCCGCATTNGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCa < 1:3264172/68‑1 (MQ=255) tGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGGCATCTGTTATCa < 1:3877785/68‑1 (MQ=255) tGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCa < 1:3405500/68‑1 (MQ=255) ggCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCAc < 1:2811946/68‑1 (MQ=255) ggCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCAc < 1:163003/68‑1 (MQ=255) ggCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCAc < 1:2278219/68‑1 (MQ=255) ggCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCAc < 1:1811215/68‑1 (MQ=255) ggCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCAc < 1:1476918/68‑1 (MQ=255) ggCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCAc < 1:144746/68‑1 (MQ=255) aGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACGACTGTTATCACCTa > 1:2887313/1‑68 (MQ=25) gCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAAc < 1:2205820/68‑1 (MQ=255) gCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAAc < 1:332523/68‑1 (MQ=255) gCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAAc < 1:1602206/68‑1 (MQ=255) gCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAAc < 1:290242/68‑1 (MQ=255) gCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAAc < 1:2845837/68‑1 (MQ=255) gCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAAc < 1:2395749/68‑1 (MQ=255) gCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAAc < 1:1234467/68‑1 (MQ=255) gCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTGCCAGACATCTGTTATCACTTAAc < 1:1471566/68‑1 (MQ=255) gTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCa < 1:854626/68‑1 (MQ=255) gTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCa < 1:3171472/68‑1 (MQ=255) aaaCAAATCCGCATTCGTGGCTGGATTTGCCCGTATATTTCCAGACATCTGTTATCACTTAACCCAtt < 1:2733397/68‑1 (MQ=255) aaaCAAATCCGCATTCGTGGCTGGATTTGCCCCTGTATTTCCAGACATCTGTTATCACTTAACCCAtt < 1:1147437/68‑1 (MQ=255) aaaCAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCAtt < 1:2789317/68‑1 (MQ=255) aaaCAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCAtt < 1:2740060/68‑1 (MQ=255) aaaCAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCAtt < 1:499682/68‑1 (MQ=255) aaaCAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCAtt < 1:77433/68‑1 (MQ=255) aaaCAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCAtt < 1:1666659/68‑1 (MQ=255) aaaCAAATCCGCATTCGTGGCTGGATTTGCCCATATATTTCCAGACATCTGTTATCACTTAACCCAtt < 1:3190580/68‑1 (MQ=255) aCAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAc > 1:2859496/1‑68 (MQ=255) aCAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAc > 1:113708/1‑68 (MQ=255) aCAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAc > 1:680720/1‑68 (MQ=255) aCAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAAATATCTGTTCTCATTTAACCCCTTaa > 1:3488516/1‑67 (MQ=18) aaTCCGCATTCGTGGCTGGATTTGCCCCTATATGTCCAGACATCTGTTATCACTTAACCCATTACAAg < 1:886056/68‑1 (MQ=255) ttCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCATTTAACCCATTACAAGCCCGCTGc < 1:1680998/68‑1 (MQ=255) ttCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGc < 1:103506/68‑1 (MQ=255) tCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGcc > 1:2373835/1‑68 (MQ=40) tCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGcc < 1:3935112/68‑1 (MQ=40) cGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCg > 1:1291470/1‑68 (MQ=39) tGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCa > 1:500584/1‑68 (MQ=35) ggCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAg < 1:2143718/68‑1 (MQ=33) gCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGa < 1:1915988/68‑1 (MQ=31) | CATCCCCGGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGA > NC_000913/2068877‑2069006 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |