| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,815,895 | Δ25 bp | coding (631‑655/687 nt) | rph ← | truncated RNase PH |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3815895 | 3815919 | 25 | 18 [0] | [0] 18 | rph | truncated RNase PH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815894 | 0 (0.000) | 16 (0.430) | 14/126 | 0.5 | 100% | coding (656/687 nt) | rph | truncated RNase PH |
| ? | NC_000913 | 3815920 = | 0 (0.000) | coding (630/687 nt) | rph | truncated RNase PH | |||||
AAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3815831‑3815894‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACT > NC_000913/3815920‑3815983 AAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGG < 1:2594688/65‑1 AATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGGG < 1:1303294/65‑1 cGCCAGCGCCGCCTTCTGCGCCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGGGTGAACGGC < 1:932636/64‑1 ggtGCCGCCTTCTGCGTCGCTGCAGTGGATTGGATTCCCCTCGGGCCAGAGGGTGAACGGCTCGC < 1:600629/62‑1 AGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGGGTGAACGGCTCGC < 1:1596500/65‑1 GCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGGGTGAACGGCTCGCC < 1:285594/65‑1 ccCCGCCTTCTGCGTCGCTACAATGGATTCGAGTCCCCTCGGGCCAGAGGGTGAACGGCTCGCCT < 1:574591/63‑1 CGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGGGTGAACGGCTCGCCTTCT < 1:2673995/65‑1 CCTTCGGCGTCGCTGCAATGGATTCGATTCCCCTCGGGCCAGAGGGTGAACGGCTCGCCTTCTGC < 1:2269043/65‑1 TGCGCCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGGGTGAACGGCTCGCCTTCTGCCGTCC < 1:1503664/65‑1 GCTACAATGGATTCGATTCCCCTCGGGCCAGAGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCA < 1:999131/65‑1 TACAATGGATTCGATTCCCCTCGGGCCAGAGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACT < 1:739476/65‑1 ATTCGATTCCCCTCGGGCCAGAGGGTGAACGGCTCCCCTTCTGCCCTCCCCTGCCCTTCAATGAT > 1:1556276/1‑65 ATTCCCCTCGGGCCAGAGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCC > 1:2118107/1‑65 CCTCGGGCCAGAGGGTGAACGGCTCGCCTTCTGCCGCCCCCTGCACTTCAATGATGCGCCCGTCT < 1:1822192/65‑1 AGAGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATC < 1:2899879/65‑1 GGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACT > 1:2333966/1‑65 GGGTGAACGGCTCGCCTTCTGCCCTCCCCTGCACTTCCATGATGCGCCCGTCTTCGGTCATCACT > 1:1036504/1‑65 AAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3815831‑3815894‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACT > NC_000913/3815920‑3815983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |