| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,815,895 | Δ25 bp | coding (631‑655/687 nt) | rph ← | truncated RNase PH |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3815895 | 3815919 | 25 | 18 [0] | [0] 18 | rph | truncated RNase PH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815894 | 0 (0.000) | 16 (0.430) | 14/126 | 0.5 | 100% | coding (656/687 nt) | rph | truncated RNase PH |
| ? | NC_000913 | 3815920 = | 0 (0.000) | coding (630/687 nt) | rph | truncated RNase PH | |||||
AAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAAT > NC_000913/3815831‑3815958 | aaaTCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGg < 1:2594688‑M1/65‑2 (MQ=255) aaTCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGgg < 1:1303294‑M1/65‑3 (MQ=255) cgcCAGCGCCGCCTTCTGCGCCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGggtgaacggc < 1:932636‑M1/64‑11 (MQ=255) ggtgccgccttcTGCGTCGCTGCAGTGGATTGGATTCCCCTCGGGCCAGAGggtgaacggctcgc < 1:600629‑M1/62‑15 (MQ=255) aGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGggtgaacggctcgc < 1:1596500‑M1/65‑15 (MQ=255) gcgcCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGggtgaacggctcgcc < 1:285594‑M1/65‑16 (MQ=255) ccccgccttCTGCGTCGCTACAATGGATTCGAGTCCCCTCGGGCCAGAGggtgaacggctcgcct < 1:574591‑M1/63‑17 (MQ=255) cgccTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGggtgaacggctcgccttct < 1:2673995‑M1/65‑20 (MQ=255) ccTTCGGCGTCGCTGCAATGGATTCGATTCCCCTCGGGCCAGAGggtgaacggctcgccttctgc < 1:2269043‑M1/65‑22 (MQ=255) tGCGCCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGggtgaacggctcgccttctgccgtcc < 1:1503664‑M1/65‑27 (MQ=255) gCTACAATGGATTCGATTCCCCTCGGGCCAGAGggtgaacggctcgccttctgccgtcccctgca < 1:999131‑M1/65‑33 (MQ=255) tACAATGGATTCGATTCCCCTCGGGCCAGAGggtgaacggctcgccttctgccgtcccctgcact < 1:739476‑M1/65‑35 (MQ=255) attcgattcCCCTCGGGCCAGAGggtgaacggctccccttctgccctcccctgcccttcaatgat > 1:1556276‑M1/1‑23 (MQ=255) attcCCCTCGGGCCAGAGggtgaacggctcgccttctgccgtcccctgcacttcaatgatgcgcc > 1:2118107‑M1/1‑18 (MQ=255) ccTCGGGCCAGAGggtgaacggctcgccttctgccgccccctgcacttcaatgatgcgcccgtct < 1:1822192‑M1/65‑53 (MQ=255) agagggtgaacggctcgccttctgccgtcccctgcacttcaatgatgcgcccgtcttcggtcatc < 1:2899879‑M1/65‑62 (MQ=255) gggtgaacggctcgccttctgccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcact > 1:2333966‑M1/1‑1 (MQ=255) gggtgaacggctcgccttctgccctcccctgcacttccatgatgcgcccgtcttcggtcatcact > 1:1036504‑M1/1‑1 (MQ=255) | AAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAAT > NC_000913/3815831‑3815958 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |