New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1603798 | 28 (0.570) | 6 (0.120) | 4/128 | 2.4 | 18.2% | coding (780/1029 nt) | lsrC | Autoinducer‑2 ABC transporter membrane subunit LsrC |
? | NC_000913 | 1603802 = | 26 (0.530) | coding (784/1029 nt) | lsrC | Autoinducer‑2 ABC transporter membrane subunit LsrC | |||||
Rejected: Frequency below/above cutoff threshold. |
CAGCCTGCGTGCTGGGCGGCATTAGTTTGCTCGGTGGTTCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1603755‑1603798 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCATTGGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGTACT > NC_000913/1603802‑1603854 CAGCCTGCGTGCTGGGCGGCATTATTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGC < 1:1065916/65‑1 CAGCCTGCGTGCTGGGCGGCATTAGTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGC < 1:3346379/65‑1 GGGCGGCCTTATTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGA < 1:1523921/65‑1 GTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGAT < 1:2144540/65‑1 CTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGT < 1:3206953/65‑1 GGTGGTCGCCGTATCATTGGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGTACT < 1:1705782/65‑1 CAGCCTGCGTGCTGGGCGGCATTAGTTTGCTCGGTGGTTCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1603755‑1603798 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCATTGGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGTACT > NC_000913/1603802‑1603854 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |