| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 246193 | 0 (0.000) | 56 (1.260) | 30/128 | 0.1 | 100% | coding (47/279 nt) | yafQ | ribosome‑dependent mRNA interferase toxin YafQ |
| ? | NC_000913 | 273955 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
GATAAGAAGCGTCATAAGATATTTCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTACATCCTTTGAATATTGTCCCGAGTATTCAATATCCCTTTGAATCATATTTAAATTCCTAATTTA > NC_000913/246129‑246257 | gATAAGAAGCGTCATAAGATATTTCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTa > 1:746046/1‑65 (MQ=255) tAAGAAGCGTCATAAGATATTTCAATTTATACATATCCTTATGACGCTTTTGTGCAAGTTTTAgg > 1:379973‑M1/1‑63 (MQ=255) aagCGTCATAAGATATTTCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaagg < 1:1307056‑M1/65‑7 (MQ=255) agCGTCATAAGATATTTCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggagggt < 1:2000487‑M1/65‑8 (MQ=255) agCGTCATAAGATATTTCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggt > 1:2982563‑M1/1‑58 (MQ=255) agCGTCATAAGATATTTCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggt < 1:2982303‑M1/65‑8 (MQ=255) agCGTCATAAGATATTTCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggt > 1:2051523‑M1/1‑58 (MQ=255) aaGATATTTCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataa > 1:2673943‑M1/1‑50 (MQ=255) aGATATTTCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataag > 1:2298599‑M1/1‑49 (MQ=255) atatTTCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcg > 1:2158514‑M1/1‑47 (MQ=255) atatTTCAATTTATTCATATCCTTATCGCGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcg < 1:3051596‑M1/65‑19 (MQ=255) atTTCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggg < 1:472741‑M1/65‑21 (MQ=255) atTTCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggg < 1:3315792‑M1/65‑21 (MQ=255) atTTCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggg < 1:2575570‑M1/65‑21 (MQ=255) tCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaa > 1:999519‑M1/1‑42 (MQ=255) aaTTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaat < 1:2085418‑M1/65‑26 (MQ=255) aTTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaatt > 1:389272‑M1/1‑39 (MQ=255) tttATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattc > 1:210998‑M1/1‑38 (MQ=255) tttATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattc > 1:807463‑M1/1‑38 (MQ=255) ttATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattct < 1:949746‑M1/65‑29 (MQ=255) ttATTCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattct < 1:1146902‑M1/65‑29 (MQ=255) agattCATATCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtaccaataagcggggaaattct < 1:2858999‑M1/63‑29 (MQ=255) cATATCCTGATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcg < 1:157096‑M1/65‑34 (MQ=255) tCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctg > 1:2030141‑M1/1‑28 (MQ=255) tCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctg > 1:2179986‑M1/1‑28 (MQ=255) tCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctg > 1:793471‑M1/1‑28 (MQ=255) tCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctg > 1:180241‑M1/1‑28 (MQ=255) tCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctg > 1:3008463‑M1/1‑28 (MQ=255) tCCTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctg > 1:1713454‑M1/1‑28 (MQ=255) ccTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctga < 1:1030873‑M1/65‑39 (MQ=255) ccTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctga < 1:2629665‑M1/65‑39 (MQ=255) ccTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctga < 1:1957814‑M1/65‑39 (MQ=255) ccTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctga > 1:230659‑M1/1‑27 (MQ=255) cTTATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgac < 1:400339‑M1/65‑40 (MQ=255) tATGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactc > 1:171039‑M1/1‑24 (MQ=255) tGACGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcag < 1:1609582‑M1/65‑44 (MQ=255) cGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgcctcagtca > 1:3204153‑M1/1‑19 (MQ=255) cGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtca > 1:2022413‑M1/1‑19 (MQ=255) cGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtca < 1:978888‑M1/65‑47 (MQ=255) cGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtca > 1:95860‑M1/1‑19 (MQ=255) cGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtca > 1:1957687‑M1/1‑19 (MQ=255) cGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtca > 1:793576‑M1/1‑19 (MQ=255) cGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtca < 1:479598‑M1/65‑47 (MQ=255) cGCTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtca > 1:3217846‑M1/1‑19 (MQ=255) cGCTTTTGTGCAAGTTTTAggaaggggcgaataagcggggaaattcttctcggctgactcagtca > 1:1411093‑M1/1‑19 (MQ=255) cTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatt < 1:3355470‑M1/65‑49 (MQ=255) cTTTTGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatt > 1:2999962‑M1/1‑17 (MQ=255) ttGTGCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca < 1:3474111‑M1/65‑52 (MQ=255) tgtgCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat > 1:2314044‑M1/1‑13 (MQ=255) tgCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattt < 1:1076190‑M1/65‑55 (MQ=255) tgCAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattt < 1:3085149‑M1/65‑55 (MQ=255) cAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct < 1:567535‑M1/65‑57 (MQ=255) cAAGTTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct < 1:1446121‑M1/65‑57 (MQ=255) cAAGTTTTAcgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct < 1:380880‑M1/65‑57 (MQ=255) ttttAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcat > 1:860079‑M1/1‑5 (MQ=255) ttttAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcat > 1:2327630‑M1/1‑5 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt > 1:1868746‑M1/1‑1 (MQ=255) | GATAAGAAGCGTCATAAGATATTTCAATTTATTCATATCCTTATGACGCTTTTGTGCAAGTTTTACATCCTTTGAATATTGTCCCGAGTATTCAATATCCCTTTGAATCATATTTAAATTCCTAATTTA > NC_000913/246129‑246257 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |