| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 4,542,578 | IS1 (+) +9 bp | 17.5% | coding (542‑550/597 nt) | fimE → | regulator for fimA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 21 (0.180) | 21/176 | NT | 15.3% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4542578 = | 104 (0.970) | coding (542/597 nt) | fimE | regulator for fimA | |||||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 23 (0.190) | 19/176 | NT | 16.5% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4542586 | 104 (0.970) | coding (550/597 nt) | fimE | regulator for fimA | |||||
CAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3583514‑3583428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGCGAATATTTCGATGCCCGAGATAATCCTGAATTAAACGAGTATCT < NC_000913/4542586‑4542489 CAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGG > 2:2108457/1‑99 GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAA > 1:1977882/1‑99 CAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAG > 1:1828035/1‑99 CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAG < 1:30282/99‑1 TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGC > 2:1203904/1‑99 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGG < 2:938586/99‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTA > 1:1976521/1‑99 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCA < 2:2973722/99‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATG < 2:649897/99‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCTGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGG < 2:550244/99‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGG < 1:2388322/99‑1 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGC < 1:3082202/99‑1 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGC < 2:1903846/99‑1 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGCGA > 1:1060816/1‑99 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGCGAA < 2:1125373/99‑1 TACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGCGAATATTTCGATGC < 2:2067161/99‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGCGAATATTTCGATGCC < 2:2634656/99‑1 ATCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGCGAATATTTCGATGCCCGAGATA > 1:2070542/1‑99 TCAGTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGCGAATATTTCGATGCCCGAGATAA > 2:2681356/1‑99 GTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGCGAATATTTCGATGCCCGAGATAATCC > 2:2553314/1‑99 GTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGCGAATATTTCGATGCCCGAGATAATCC > 1:1828251/1‑99 GTAAGTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGCGAATATTTCGATGCCCGAGATAATCC > 1:791914/1‑99 GTTGGCAGCATCACCCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGCGAATATTTCGATGCCCGAGATAATCCTGAA < 2:2154519/99‑1 CCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGCGAATATTTCGATGCCCGAGATAATCCTGAATTAAACGAGTATCT < 2:915779/99‑1 CAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3583514‑3583428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACAGTATGGCGAATATTTCGATGCCCGAGATAATCCTGAATTAAACGAGTATCT < NC_000913/4542586‑4542489 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |