| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | NC_000913 | 1,397,381 | Δ13,756 bp | 100% | [ynaJ]–[ttcA] | 16 genes [ynaJ], uspE, fnr, ogt, abgT, abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, [ttcA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1397381 | 1411136 | 13756 | 77 [0] | [0] 82 | [ynaJ]–[ttcA] | [ynaJ],uspE,fnr,ogt,abgT,abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,[ttcA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1397380 | 0 (0.000) | 66 (0.830) | 49/174 | NT | 100% | coding (16/258 nt) | ynaJ | DUF2534 domain‑containing protein YnaJ |
| ? | NC_000913 | 1411137 = | 0 (0.000) | coding (812/936 nt) | ttcA | tRNA cytosine(32) 2‑sulfurtransferase TtcA | |||||
GTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1397283‑1397380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCG > NC_000913/1411137‑1411232 GTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACA > 2:1169947/1‑99 TTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACAC < 2:982459/99‑1 TTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTT < 2:1819746/99‑1 TCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTC < 1:674833/99‑1 GCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAAC < 1:818788/99‑1 GCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAAC < 2:2011396/99‑1 GCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAAC < 2:1142359/99‑1 GACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGT > 2:1929160/1‑99 ACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGT > 1:2067819/1‑99 CGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTG > 1:435915/1‑99 TGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATG < 2:299904/99‑1 TGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATG < 1:950698/99‑1 AATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCT > 2:798024/1‑99 TGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTT < 2:1239541/99‑1 ATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAA < 2:1779265/99‑1 GGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATC < 2:774969/99‑1 TATTGTTTCGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCCTGGGTGATGCCTTTGAAATCGA < 1:2029902/99‑1 TTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAAC < 1:1166383/99‑1 TTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAAC < 1:83007/99‑1 TTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAAC < 2:60564/99‑1 TTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGG > 2:1706328/1‑99 TTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGG > 2:1108312/1‑99 TTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGG > 2:1840204/1‑99 TTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGG > 1:1175524/1‑99 ACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTT > 1:972850/1‑99 CGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTG > 1:1322441/1‑99 GTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGG < 1:1776246/99‑1 GTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGG < 1:1793025/99‑1 GTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGG > 1:1559086/1‑99 TTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGT < 2:1938940/99‑1 TTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGT > 2:2117543/1‑99 TAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTAT < 1:1000710/99‑1 TAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTAT < 1:458358/99‑1 GGTAACAAGAATTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCG > 1:117502/1‑99 GGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCG > 2:1204035/1‑99 GGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCG > 1:2154448/1‑99 TAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCA < 2:2132873/99‑1 TAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCA > 1:1894168/1‑99 AACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCAC > 2:518253/1‑99 AGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGAT > 1:622718/1‑99 AGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGAT < 1:1075397/99‑1 GAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATG < 2:1868946/99‑1 AATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCG > 1:243998/1‑99 AATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCG > 1:1347420/1‑99 ATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGA < 2:1185540/99‑1 TTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGAC > 1:171365/1‑99 TTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGAC < 2:1587421/99‑1 TCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCA > 1:1668306/1‑99 TCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCA > 1:2101080/1‑99 TCTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCA > 1:2118250/1‑99 CTGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCAC < 2:1428111/99‑1 TGCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACC < 1:1960483/99‑1 GCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCA < 2:1454729/99‑1 GCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCA < 1:251660/99‑1 GCACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCA > 2:210241/1‑99 ACAAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACA < 2:348570/99‑1 AAGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATT < 1:2009397/99‑1 AGGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTC < 2:1913356/99‑1 GGATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCT < 2:1620591/99‑1 ATTACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGC < 1:1756579/99‑1 TACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCAT < 1:558490/99‑1 ACATCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATC < 2:580569/99‑1 TCATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCG > 1:96608/1‑99 CATGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGC < 1:1046306/99‑1 TGATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTG > 1:790090/1‑99 GATTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGA > 1:2098875/1‑99 TTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAAC > 1:377376/1‑99 TTATGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAAC > 1:2028151/1‑99 TGGCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATC > 2:1932454/1‑99 GCGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGT < 1:633926/99‑1 CGAAACACTTCAGAACCGTGTGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGGCGGCACCACATTCTGCATCGCGCTGAACATCGTC < 1:1823594/99‑1 CGAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTC < 1:2158758/99‑1 GAAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCT < 1:2035644/99‑1 AAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTC > 1:1408073/1‑99 AAACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTC > 1:1749216/1‑99 AACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCG > 1:399769/1‑99 AACACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCG > 2:84784/1‑99 GTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1397283‑1397380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCG > NC_000913/1411137‑1411232 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |