| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | NC_000913 | 1,397,381 | Δ13,756 bp | 100% | [ynaJ]–[ttcA] | 16 genes [ynaJ], uspE, fnr, ogt, abgT, abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, [ttcA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1397381 | 1411136 | 13756 | 77 [0] | [0] 82 | [ynaJ]–[ttcA] | [ynaJ],uspE,fnr,ogt,abgT,abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,[ttcA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1397380 | 0 (0.000) | 66 (0.830) | 49/174 | NT | 100% | coding (16/258 nt) | ynaJ | DUF2534 domain‑containing protein YnaJ |
| ? | NC_000913 | 1411137 = | 0 (0.000) | coding (812/936 nt) | ttcA | tRNA cytosine(32) 2‑sulfurtransferase TtcA | |||||
GTAACTCATCCAACTGATTTTCATCTTCTTCTGGCTGCCAGCACGCCGGTTGTAGTGGGATCTCTTCGCGATCAAACGCCAGATCACCCCCGTTAACCACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATA > NC_000913/1411039‑1411235 | gttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaaca > 2:1169947‑M2/99‑99 (MQ=255) ttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacac < 2:982459‑M2/2‑1 (MQ=255) ttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACtt < 2:1819746‑M2/4‑1 (MQ=255) tcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTc < 1:674833‑M2/5‑1 (MQ=255) gcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAAc < 2:2011396‑M2/10‑1 (MQ=255) gcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAAc < 1:818788‑M2/10‑1 (MQ=255) gcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAAc < 2:1142359‑M2/10‑1 (MQ=255) gacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGt > 2:1929160‑M2/87‑99 (MQ=255) acggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGt > 1:2067819‑M2/83‑99 (MQ=255) cggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTg > 1:435915‑M2/82‑99 (MQ=255) tgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATg < 1:950698‑M2/21‑1 (MQ=255) tgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATg < 2:299904‑M2/21‑1 (MQ=255) aatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCt > 2:798024‑M2/76‑99 (MQ=255) tgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCttt < 2:1239541‑M2/26‑1 (MQ=255) atggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGaaa < 2:1779265‑M2/30‑1 (MQ=255) ggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATc < 2:774969‑M2/32‑1 (MQ=255) tattgtttcgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCCTGGGTGATGCCTTTGAAATCGa < 1:2029902‑M2/34‑1 (MQ=255) ttgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAAc < 2:60564‑M2/36‑1 (MQ=255) ttgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAAc < 1:83007‑M2/36‑1 (MQ=255) ttgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAAc < 1:1166383‑M2/36‑1 (MQ=255) ttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAgg > 2:1108312‑M2/61‑99 (MQ=255) ttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAgg > 2:1706328‑M2/61‑99 (MQ=255) ttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAgg > 1:1175524‑M2/61‑99 (MQ=255) ttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAgg > 2:1840204‑M2/61‑99 (MQ=255) acgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGtt > 1:972850‑M2/59‑99 (MQ=255) cgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTg > 1:1322441‑M2/58‑99 (MQ=255) gtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTgg < 1:1793025‑M2/43‑1 (MQ=255) gtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTgg < 1:1776246‑M2/43‑1 (MQ=255) gtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTgg > 1:1559086‑M2/57‑99 (MQ=255) tttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGt < 2:1938940‑M2/44‑1 (MQ=255) tttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGt > 2:2117543‑M2/56‑99 (MQ=255) taggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTAt < 1:1000710‑M2/46‑1 (MQ=255) taggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTAt < 1:458358‑M2/46‑1 (MQ=255) ggtaacaagaattttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCg > 1:117502‑M2/52‑99 (MQ=255) ggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCg > 2:1204035‑M2/52‑99 (MQ=255) ggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCg > 1:2154448‑M2/52‑99 (MQ=255) taacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGca < 2:2132873‑M2/50‑1 (MQ=255) taacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGca > 1:1894168‑M2/50‑99 (MQ=255) aacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGcac > 2:518253‑M2/49‑99 (MQ=255) agaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGAt < 1:1075397‑M2/55‑1 (MQ=255) agaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGAt > 1:622718‑M2/45‑99 (MQ=255) gaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATg < 2:1868946‑M2/56‑1 (MQ=255) aatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCg > 1:1347420‑M2/42‑99 (MQ=255) aatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCg > 1:243998‑M2/42‑99 (MQ=255) atttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGa < 2:1185540‑M2/59‑1 (MQ=255) tttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGAc < 2:1587421‑M2/60‑1 (MQ=255) tttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGAc > 1:171365‑M2/40‑99 (MQ=255) tctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGca > 1:2118250‑M2/36‑99 (MQ=255) tctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGca > 1:2101080‑M2/36‑99 (MQ=255) tctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGca > 1:1668306‑M2/36‑99 (MQ=255) ctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGcac < 2:1428111‑M2/65‑1 (MQ=255) tgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGcacc < 1:1960483‑M2/66‑1 (MQ=255) gcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGcacca < 1:251660‑M2/67‑1 (MQ=255) gcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGcacca < 2:1454729‑M2/67‑1 (MQ=255) gcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGcacca > 2:210241‑M2/33‑99 (MQ=255) acaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACcaca < 2:348570‑M2/69‑1 (MQ=255) aaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACAtt < 1:2009397‑M2/71‑1 (MQ=255) aggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTc < 2:1913356‑M2/72‑1 (MQ=255) ggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCt < 2:1620591‑M2/73‑1 (MQ=255) attacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGc < 1:1756579‑M2/75‑1 (MQ=255) tacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCAt < 1:558490‑M2/77‑1 (MQ=255) acatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATc < 2:580569‑M2/78‑1 (MQ=255) tcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATcgcg > 1:96608‑M2/19‑99 (MQ=255) catgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCgcgc < 1:1046306‑M2/82‑1 (MQ=255) tgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTg > 1:790090‑M2/16‑99 (MQ=255) gattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGa > 1:2098875‑M2/15‑99 (MQ=255) ttatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAAc > 1:2028151‑M2/13‑99 (MQ=255) ttatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAAc > 1:377376‑M2/13‑99 (MQ=255) tggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATc > 2:1932454‑M2/10‑99 (MQ=255) gcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGt < 1:633926‑M2/92‑1 (MQ=255) cgaaacACTTCAGAACCGTGTGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGGCGGCACCACATTCTGCATCGCGCTGAACATCGtc < 1:1823594‑M2/93‑1 (MQ=255) cgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGtc < 1:2158758‑M2/93‑1 (MQ=255) gaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGtct < 1:2035644‑M2/94‑1 (MQ=255) aaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGtctc > 1:1408073‑M2/5‑99 (MQ=255) aaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGtctc > 1:1749216‑M2/5‑99 (MQ=255) aacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCg > 1:399769‑M2/4‑99 (MQ=255) aacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCg > 2:84784‑M2/4‑99 (MQ=255) aCTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATa < 1:675270/99‑1 (MQ=255) aCTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATa > 1:980938/1‑99 (MQ=255) aCTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATa < 2:1411601/99‑1 (MQ=255) aCTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATa < 1:1662810/99‑1 (MQ=255) aCTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATa < 2:1820339/99‑1 (MQ=255) | GTAACTCATCCAACTGATTTTCATCTTCTTCTGGCTGCCAGCACGCCGGTTGTAGTGGGATCTCTTCGCGATCAAACGCCAGATCACCCCCGTTAACCACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATA > NC_000913/1411039‑1411235 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |