Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC NC_000913 4,542,428 IS1 (+) +9 bp 11.2% coding (392‑400/597 nt) fimE → regulator for fimA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3583428 =NA (NA)13 (0.100) 12/176 NT 9.8% noncoding (1/768 nt) IS1 repeat region
?NC_000913 = 4542436 107 (0.910)coding (400/597 nt) fimE regulator for fimA
* ? NC_000913 = 3584195NA (NA)14 (0.110) 12/176 NT 10.5% noncoding (768/768 nt) IS1 repeat region
?NC_000913 4542428 = 107 (0.910)coding (392/597 nt) fimE regulator for fimA

Only 100 of 170 total aligned reads displayed.

CTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGC  >  NC_000913/4542338‑4542534
                                                                                                  |                                                                                                  
cTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTc                                                                                                    >  1:3341090/1‑99 (MQ=255)
      ttatttCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGGTGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTc                                                                                              <  1:1694741/99‑1 (MQ=255)
       tatttCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCa                                                                                             >  2:2846933/1‑99 (MQ=255)
       tatttCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCa                                                                                             <  2:2160181/99‑1 (MQ=255)
         tttCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCata                                                                                           <  1:2650581/99‑1 (MQ=255)
         tttCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCata                                                                                           <  1:1654739/99‑1 (MQ=255)
           tctcGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATg                                                                                         <  1:3244809/99‑1 (MQ=255)
             tcGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGtt                                                                                       >  1:2574193/1‑99 (MQ=255)
             tcGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGtt                                                                                       >  1:355091/1‑99 (MQ=255)
               gccgcGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTaa                                                                                     <  2:853580/99‑1 (MQ=255)
                ccgcGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAg                                                                                    >  2:632804/1‑99 (MQ=255)
                 ggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCGCAGACTCATCCTCATATGTTAAgg                                                                                   <  2:2689738‑M2/26‑1 (MQ=255)
                  gcgGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCggtgatgctgccaactta                                                                                  >  1:2466117‑M2/1‑81 (MQ=255)
                  gcgGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCggtgatgctgccaactta                                                                                  >  1:1729705‑M2/1‑81 (MQ=255)
                    gggAGTCGGCTTTCTCGCCAGCAGGCCTATCCCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCAt                                                                                >  1:220135/1‑99 (MQ=255)
                     ggAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATg                                                                               >  2:412389/1‑99 (MQ=255)
                     ggAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATg                                                                               >  1:1727943/1‑99 (MQ=255)
                     ggAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATg                                                                               >  1:1231326/1‑99 (MQ=255)
                       aGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCt                                                                             <  1:1554910/99‑1 (MQ=255)
                       aGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCt                                                                             <  2:2558639/99‑1 (MQ=255)
                       aGTCGGCTTTCTCGCCAGCAGGCCTATCCCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCt                                                                             <  2:2911742/99‑1 (MQ=255)
                         tCGGCTTTCTCGCCAGCAGGCCTATCGCGTTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTg                                                                           >  2:2188939/1‑99 (MQ=255)
                           ggCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCg                                                                         <  1:1373201/99‑1 (MQ=255)
                           catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCGCAGACTCATCCTCATATGTTAAGGCATGCTTGCg                                                                         >  2:1383159‑M2/64‑99 (MQ=255)
                            gCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCgg                                                                        >  1:275906/1‑99 (MQ=255)
                             cTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGt                                                                       <  2:1401207/99‑1 (MQ=255)
                             cTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGt                                                                       <  1:3245733/99‑1 (MQ=255)
                             cTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGt                                                                       <  2:776446/99‑1 (MQ=255)
                               ttCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTa                                                                     <  2:1749177/99‑1 (MQ=255)
                               ttCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTa                                                                     >  2:2314225/1‑99 (MQ=255)
                               ttCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTa                                                                     <  2:2590874/99‑1 (MQ=255)
                               ttCTCGCCAGCAGGCCTATCCCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTa                                                                     >  2:3234490/1‑99 (MQ=255)
                                  tcGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGa                                                                  >  2:2599442/1‑99 (MQ=255)
                                   agtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGaa                                                                 >  1:3433476‑M2/56‑99 (MQ=255)
                                     ccAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCggtgatgctgccaacttactgatttagtgtatgatgg                                                               <  1:1855744‑M2/99‑38 (MQ=255)
                                     ccAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAAtt                                                               >  1:1725336/1‑99 (MQ=255)
                                     ccAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAAtt                                                               <  1:1513594/99‑1 (MQ=255)
                                      cagcagGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTg                                                              >  1:2925503/1‑99 (MQ=255)
                                       agcagGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTgg                                                             >  1:1893002/1‑99 (MQ=255)
                                           ggCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGa                                                         >  1:741524/1‑99 (MQ=255)
                                            gCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAg                                                        <  1:2410323/99‑1 (MQ=255)
                                               ttatctgaacataaaacactatcaataagttggagtcattaccCGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCgt                                                     >  1:940169‑M2/44‑99 (MQ=255)
                                               tATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCgt                                                     >  2:3284600/1‑99 (MQ=255)
                                               tATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCgt                                                     <  1:1893233/99‑1 (MQ=255)
                                                 tCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCgtgg                                                   <  2:3445598/99‑1 (MQ=255)
                                                  tctgaacataaaacactatcaataagttggagtcattaccCGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCgtggt                                                  >  2:562129‑M2/41‑99 (MQ=255)
                                                  cGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCgtggt                                                  <  2:1639361/99‑1 (MQ=255)
                                                   gCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCgtggtg                                                 >  1:682021/1‑99 (MQ=255)
                                                      ttattCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAg                                              >  1:1021906/1‑99 (MQ=255)
                                                      aacataaaacactatcaataagttggagtcattaccCGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAg                                              >  2:638434‑M2/37‑99 (MQ=255)
                                                       acataaaacactatcaataagttggagtcattaccCGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGa                                             <  2:70560‑M2/64‑1 (MQ=255)
                                                        cataaaacactatcaataagttggagtcattaccCGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGAt                                            >  2:865869‑M2/35‑99 (MQ=255)
                                                        attCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGAt                                            >  2:3473759/1‑99 (MQ=255)
                                                         ttCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagt                                           <  2:255366‑M2/99‑58 (MQ=255)
                                                          tCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATAc                                          <  2:2395965/99‑1 (MQ=255)
                                                           cgcgATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACt                                         <  2:2621009/99‑1 (MQ=255)
                                                                  ccGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTaa                                  <  1:2979230/99‑1 (MQ=255)
                                                                   cGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAAt                                 <  2:3449048/99‑1 (MQ=255)
                                                                   cGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAAt                                 <  2:3385389/99‑1 (MQ=255)
                                                                    ggTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAAtt                                <  2:1422675/99‑1 (MQ=255)
                                                                    ggTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAAtt                                >  2:2987523/1‑99 (MQ=255)
                                                                     gTATTGAAGCTGGAACCGTAACGCAGACTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc                               >  1:1695803‑M2/1‑30 (MQ=255)
                                                                     gTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTc                               >  2:28045/1‑99 (MQ=255)
                                                                     gTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTc                               >  2:2326453/1‑99 (MQ=255)
                                                                        ttGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAgg                            >  1:2228881/1‑99 (MQ=255)
                                                                        ttGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAgg                            >  1:842271/1‑99 (MQ=255)
                                                                          gAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGAt                          <  1:1040021/99‑1 (MQ=255)
                                                                          gAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGAt                          <  2:1981683/99‑1 (MQ=255)
                                                                           aaGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGAtt                         >  2:3207251/1‑99 (MQ=255)
                                                                            aGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTa                        <  1:1945141/99‑1 (MQ=255)
                                                                             gCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTAt                       <  2:551870/99‑1 (MQ=255)
                                                                             gCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTAt                       >  1:2190082/1‑99 (MQ=255)
                                                                              cTGGAACCGTAACGCAGACTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctg                      >  2:2163581‑M2/1‑21 (MQ=255)
                                                                                 gAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCg                   >  2:1797913/1‑99 (MQ=255)
                                                                                 gAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCg                   <  1:459401/99‑1 (MQ=255)
                                                                                  aaCCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCgg                  <  1:1114706/99‑1 (MQ=255)
                                                                                   aCCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCggg                 <  2:2637709/99‑1 (MQ=255)
                                                                                    ccGTAACGCAGACTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc                <  2:1545452‑M2/99‑85 (MQ=255)
                                                                                    attaccCGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGc                >  1:1428761‑M2/7‑99 (MQ=255)
                                                                                      gTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGcgt              <  1:1331269/99‑3 (MQ=255)
                                                                                        aaCGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCg            >  2:159704/1‑99 (MQ=255)
                                                                                         aCGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGa           >  2:1999317/1‑99 (MQ=255)
                                                                                         aCGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGa           <  2:1660441/99‑1 (MQ=255)
                                                                                         aCGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGa           >  1:1821677/1‑99 (MQ=255)
                                                                                          cGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGaa          <  2:2097200/99‑1 (MQ=255)
                                                                                           gCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGaaa         <  1:602714/99‑1 (MQ=255)
                                                                                             aGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCGTCGAAata       <  2:523264/99‑1 (MQ=255)
                                                                                             aGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAata       >  1:2718119/1‑99 (MQ=255)
                                                                                              gACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAatat      >  2:1185169/1‑99 (MQ=255)
                                                                                              gACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAatat      >  1:1586993/1‑99 (MQ=255)
                                                                                               aCTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATAtt     <  1:773240/99‑1 (MQ=255)
                                                                                               aCTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATAtt     <  2:1067874/99‑1 (MQ=255)
                                                                                                cTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTc    >  1:2341888/1‑99 (MQ=255)
                                                                                                 tCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctact   <  2:46943‑M2/99‑98 (MQ=255)
                                                                                                 tCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctact   >  1:2655259‑M2/1‑2 (MQ=255)
                                                                                                 tCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctact   <  1:1113984‑M2/99‑98 (MQ=255)
                                                                                                 tCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctact   <  1:1105821‑M2/99‑98 (MQ=255)
                                                                                                 tCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCg   >  2:3193060/1‑99 (MQ=255)
                                                                                                 tCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCg   >  2:1486718/1‑99 (MQ=255)
                                                                                                  cggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg  <  2:78088‑M2/99‑99 (MQ=255)
                                                                                                  |                                                                                                  
CTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGC  >  NC_000913/4542338‑4542534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.