Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 3,535,792 Δ9 bp 100% coding (69‑77/1353 nt) envZ ← sensory histidine kinase EnvZ

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3535792 3535800 9 113 [0] [0] 112 envZ sensory histidine kinase EnvZ

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 35357910 (0.000)107 (1.160) 82/176 NT 100% coding (78/1353 nt) envZ sensory histidine kinase EnvZ
?NC_000913 3535801 = 0 (0.000)coding (68/1353 nt) envZ sensory histidine kinase EnvZ

Only 100 of 112 total aligned reads displayed.

TCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3535694‑3535791
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTCCGGTACAAAGACGTA  >  NC_000913/3535801‑3535897
                                                                                                                                                                                                   
TCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGA                                                                                                  >  1:159346/1‑99
 CATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAG                                                                                                 >  1:543901/1‑99
     AACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAG                                                                                             >  1:1797419/1‑99
     AACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAG                                                                                             >  2:64489/1‑99
      ACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGG                                                                                            >  2:1151519/1‑99
      ACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGG                                                                                            <  1:2114933/99‑1
       CATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGT                                                                                           <  1:602935/99‑1
       CATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGT                                                                                           >  1:22215/1‑99
         TACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGA                                                                                         <  1:1025748/99‑1
         TACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGA                                                                                         <  1:1771959/99‑1
         TACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGA                                                                                         >  2:831214/1‑99
            GCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGA                                                                                      >  1:2150483/1‑99
             CACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACGAGGAGCAAGGTGACGAT                                                                                     >  2:835256/1‑99
              ACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATG                                                                                    <  2:663434/99‑1
               CTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGA                                                                                   >  2:1011596/1‑99
                TTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAG                                                                                  <  1:118299/99‑1
                TTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAG                                                                                  <  2:1595937/99‑1
                TTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAG                                                                                  <  2:205246/99‑1
                 TCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGC                                                                                 <  2:1236697/99‑1
                  CGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCA                                                                                <  2:70988/99‑1
                   GTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAA                                                                               <  1:320370/99‑1
                    TACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAAT                                                                              >  2:941531/1‑99
                     ACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATA                                                                             <  1:738606/99‑1
                      CGCGAGGACTTTATTAAGCTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCTTCACCAGGAGCAAGGTGACGATGAGCAATAA                                                                            <  1:1090868/99‑1
                       GCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAAC                                                                           <  2:306579/99‑1
                        CGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACG                                                                          <  1:1610297/99‑1
                        CGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACG                                                                          <  1:1128573/99‑1
                          AGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTA                                                                        >  2:1605807/1‑99
                           GGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTAC                                                                       <  2:236759/99‑1
                           GGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTAC                                                                       >  2:471651/1‑99
                           GGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTAC                                                                       <  1:2252181/99‑1
                            GACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACG                                                                      >  2:1997083/1‑99
                             ACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGG                                                                     >  2:776809/1‑99
                             ACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGG                                                                     <  2:60121/99‑1
                              CTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGG                                                                    <  2:2440248/99‑1
                               TTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGC                                                                   <  2:1277273/99‑1
                               TTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGC                                                                   >  1:1054950/1‑99
                               TTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGC                                                                   <  1:2161992/99‑1
                                  ATTAAACTGCTGGCGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAA                                                                <  2:1458147/99‑1
                                  ATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAA                                                                >  1:1338355/1‑99
                                     AAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGA                                                             >  2:1054529/1‑99
                                     AAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGA                                                             <  1:1516733/99‑1
                                      AACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAA                                                            <  2:1809629/99‑1
                                      AACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAA                                                            <  2:1467616/99‑1
                                      AACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAA                                                            >  2:1006095/1‑99
                                       ACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAAC                                                           <  1:1938763/99‑1
                                       ACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAAC                                                           >  2:2282294/1‑99
                                        CTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACT                                                          >  1:296699/1‑99
                                        CTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACT                                                          <  2:2284943/99‑1
                                         TGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTT                                                         <  1:495275/99‑1
                                         TGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTT                                                         <  1:2189550/99‑1
                                         TGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTT                                                         <  1:1494920/99‑1
                                          GCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTC                                                        <  1:252476/99‑1
                                           CTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCG                                                       <  1:324050/99‑1
                                              GAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGG                                                    <  1:1225529/99‑1
                                                GGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCG                                                  >  1:2325790/1‑99
                                                 GCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGA                                                 <  1:2159648/99‑1
                                                 GCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGA                                                 >  2:1647929/1‑99
                                                    CGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAA                                              <  2:670467/99‑1
                                                     GGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAG                                             <  2:2069111/99‑1
                                                     GGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAG                                             >  2:1492817/1‑99
                                                      GCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGC                                            >  1:148902/1‑99
                                                      GCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGC                                            >  1:1848931/1‑99
                                                      GCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGC                                            >  1:1866504/1‑99
                                                       CAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCG                                           <  2:773043/99‑1
                                                         AAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCA                                         >  1:480925/1‑99
                                                           ATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAAT                                       <  1:170610/99‑1
                                                           ATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAAT                                       >  1:1243848/1‑99
                                                           ATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAAT                                       >  1:1111917/1‑99
                                                           ATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAAT                                       <  1:2094245/99‑1
                                                           ATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAAT                                       <  1:2344490/99‑1
                                                            TCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATC                                      >  2:1462882/1‑99
                                                              GCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGC                                    >  1:754586/1‑99
                                                                GAAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCT                                  >  1:595650/1‑99
                                                                 AAGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTC                                 >  1:1866338/1‑99
                                                                  AGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCA                                >  1:647611/1‑99
                                                                  AGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCA                                <  2:2070822/99‑1
                                                                  AGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCA                                <  1:863644/99‑1
                                                                  AGTTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCA                                >  2:340299/1‑99
                                                                    TTCAGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATAGCCTCATG                              >  2:730374/1‑99
                                                                       AGCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTT                           >  1:441870/1‑99
                                                                        GCACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTT                          >  2:395330/1‑99
                                                                         CACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTA                         <  2:1536500/99‑1
                                                                          ACCACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAG                        <  2:821046/99‑1
                                                                            CACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAG                      <  2:1018457/99‑1
                                                                            CACCAGATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAG                      >  2:1031777/1‑99
                                                                                 GATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTC                 <  2:372623/99‑1
                                                                                 GATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTC                 <  1:400963/99‑1
                                                                                 GATAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTC                 <  1:2262148/99‑1
                                                                                   TAAGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTCCG               >  2:794494/1‑99
                                                                                     AGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTCCGGT             >  2:596529/1‑99
                                                                                     AGTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTCCGGT             >  1:1988690/1‑99
                                                                                      GTCGTCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAACTGAACTTCGTGGCGAGAAGCGAAATCGCCTCATGCTTTAGAGCCGTCCGGTA            <  2:629793/99‑1
                                                                                          TCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTCCGGTACAAA        >  1:1416248/1‑99
                                                                                          TCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTCCGGTACAAA        <  2:1048091/99‑1
                                                                                          TCACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTCCGGTACAAA        <  2:844098/99‑1
                                                                                            ACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTCCGGTACAAAGA      <  1:1429784/99‑1
                                                                                            ACCAGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTCCGGTACAAAGA      >  2:1514766/1‑99
                                                                                               AGGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTCCGGTACAAAGACGT   <  1:207804/99‑1
                                                                                                GGAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTCCGGTACAAAGACGTA  >  1:966231/1‑99
                                                                                                                                                                                                   
TCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3535694‑3535791
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTCCGGTACAAAGACGTA  >  NC_000913/3535801‑3535897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.