| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 3,802,754 | IS5 (+) +4 bp | 16.2% | coding (302‑305/1020 nt) | waaO ← | UDP‑D‑glucose:(glucosyl)LPS alpha‑1,3‑glucosyltransferase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1427599 = | NA (NA) | 17 (0.180) | 17/172 | NT | 15.9% | noncoding (1196/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | 3802754 = | 88 (0.960) | coding (305/1020 nt) | waaO | UDP‑D‑glucose:(glucosyl)LPS alpha‑1,3‑glucosyltransferase | |||||
| * | ? | NC_000913 | = 1428794 | NA (NA) | 17 (0.180) | 17/172 | NT | 15.7% | noncoding (1/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3802757 | 88 (0.970) | coding (302/1020 nt) | waaO | UDP‑D‑glucose:(glucosyl)LPS alpha‑1,3‑glucosyltransferase | |||||
GATTCGATGTGTTTGCGGGAAAAAAATCGGCCCAGATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCct‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1427696‑1427599‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTTTAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCA > NC_000913/3802754‑3802852 GATTCGATGTGTTTGCGGGAAAAAAATCGGCCCAGATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCC < 2:800500/99‑1 ATTCGATGTGTTTGCGGGAAAAAAATCGGCCCAGATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCT < 2:1551740/99‑1 ATTCGATGTGTTTGCGGGAAAAAAATCGGCCCAGATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCT > 2:1840430/1‑99 ATTCGATGTGTTTGCGGGAAAAAAATCGGCCCAGATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCT < 2:1701404/99‑1 ATTCGATGTGTTTGCGGGAAAAAAATCGGCCCAGATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCT < 2:1407255/99‑1 ATTCGATGTGTTTGCGGGAAAAAAATCGGCCCAGATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCT < 1:286444/99‑1 TTCGATGTGTTTGCGGGAAAAAAATCGGCCCAGATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTA > 2:123333/1‑99 TTTGCGGGAAAAAAATCGGCCCAGATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAG > 2:1623628/1‑99 GGAAAAAAATCGGCCCAGATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGT < 1:464893/99‑1 CGGCCCAGATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGTCGATCACCAT < 2:172889/99‑1 CCAGATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGTCGATCACCATTAAT > 1:727183/1‑99 ATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGTCGATCACCATTAATCAGA > 2:749440/1‑99 CGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATAT < 1:1127901/99‑1 GAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATT > 1:1444332/1‑99 AAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTT < 2:1651222/99‑1 AATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTTT < 2:1406232/99‑1 TTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTTTAA > 2:1575901/1‑99 TTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTTTAAT < 1:2281764/99‑1 TTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTTTAATT > 2:2308680/1‑99 GCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTTTAATTCTGGTTT > 2:2286968/1‑99 GCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTTTAATTCTGGTTT < 2:1396052/99‑1 GTCCGCTTGGGAAAAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTTTAATTCTGGTTTTATA < 2:2234306/99‑1 TTGGGAAGAAATGACCTGCTTATTCGCGCCTTCCCTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTTTAATTCTGGTTTTATACTGCAA > 1:2362723/1‑99 TTGGGAAGAAATGACCTGCTTATTCGCACCTTCCCTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTTTAATTCTGGTTTTATACTGCAA < 2:599279/99‑1 CCTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTTTAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATC < 1:1094600/99‑1 CTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTTTAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCA < 2:2130389/99‑1 CTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTTTAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCA > 1:694932/1‑99 GATTCGATGTGTTTGCGGGAAAAAAATCGGCCCAGATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACCTGCTTATTCGCACCTTCCct‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1427696‑1427599‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAGGCAATGAGCGCAGTCGATCACCATTAATCAGATATATTTTAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCA > NC_000913/3802754‑3802852 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |