| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 3,807,700 | IS1 (–) +8 bp | 27.2% | coding (392‑399/1035 nt) | waaQ ← | lipopolysaccharide core heptosyltransferase 3 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 18 (0.190) | 16/174 | NT | 23.2% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 3807707 | 54 (0.630) | coding (392/1035 nt) | waaQ | lipopolysaccharide core heptosyltransferase 3 | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 23 (0.240) | 22/176 | NT | 27.2% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 3807700 = | 56 (0.640) | coding (399/1035 nt) | waaQ | lipopolysaccharide core heptosyltransferase 3 | |||||
CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1978601‑1978503‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAAGATTGCTGGAAGAAGATGCGCCGGGAA < NC_000913/3807707‑3807610 CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC < 1:1410338/99‑1CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC < 1:1866146/99‑1CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC > 1:930926/1‑99CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC < 2:1681153/99‑1 GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGT > 2:2108823/1‑99 GTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGTAAT < 2:1828970/99‑1 ATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGTAATTTATCGGTCCTTGAGCCA > 2:1452466/1‑99 GGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGT < 1:2046085/99‑1 GAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTA < 2:1800690/99‑1 AAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTA < 1:289001/99‑1 tcgTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGTAATTTATCGGTCCTTAAGCCATTAGTTATTACCGATTTCTACAC > 2:356063/4‑99 TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGA > 2:333370/1‑99 GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACAC < 2:1981454/99‑1 ATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAAT < 2:1701347/99‑1 AAACACTATCAATAAGTTGGAGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCG > 1:694073/1‑99 ACACTATCAATAAGTTGGAGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAA > 2:2506954/1‑99 CTATCAATAAGTTGGAGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAAGAT > 2:1194331/1‑99 TATCAATAAGTTGGAGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAAGATT > 2:1665443/1‑99 TAAGTTGGAGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAAGATTGCTGGA < 2:239338/99‑1 TAAGTTGGAGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAAGATTGCTGGA > 1:1512413/1‑99 GGAGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAAGATTGCTGGAAGAAGA < 2:1874658/99‑1 GGAGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAAGATTGCTGGAAGAAGA < 1:1537698/99‑1 AGTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAAGATTGCTGGAAGAAGATG < 2:2440040/99‑1 GTCATTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAAGATTGCTGGAAGAAGATGC < 1:138093/99‑1 TTACCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAAGATTGCTGGAAGAAGATGCGCCG > 1:1338122/1‑99 CCGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAAGATTGCTGGAAGAAGATGCGCCGGGA > 2:1963420/1‑99 CGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAAGATTGCTGGAAGAAGATGCGCCGGGAA > 2:171196/1‑99 CGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAAGATTGCTGGAAGAAGATGCGCCGGGAA < 2:243368/99‑1 CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1978601‑1978503‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cGTAATTTATCGGTCCTTGAGCCATTAGGTATTACCGATTTCTACACCGACACAACAATGAGTTACGCCGAAGATTGCTGGAAGAAGATGCGCCGGGAA < NC_000913/3807707‑3807610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |