| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 3,807,700 | IS1 (–) +8 bp | 27.2% | coding (392‑399/1035 nt) | waaQ ← | lipopolysaccharide core heptosyltransferase 3 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 18 (0.190) | 16/174 | NT | 23.2% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 3807707 | 54 (0.630) | coding (392/1035 nt) | waaQ | lipopolysaccharide core heptosyltransferase 3 | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 23 (0.240) | 22/176 | NT | 27.2% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 3807700 = | 56 (0.640) | coding (399/1035 nt) | waaQ | lipopolysaccharide core heptosyltransferase 3 | |||||
CAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1979173‑1979270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGC > NC_000913/3807700‑3807793 CAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:1402618/99‑1CAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:831568/99‑1 AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTA < 1:2116441/99‑1 TAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAA < 1:2515781/99‑1 TAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAA < 2:2295091/99‑1 AGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAT < 2:1194042/99‑1 ACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAATTACGCT > 1:489458/1‑99 GGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAA < 2:1293311/99‑1 GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATA > 2:2247688/1‑99 TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTA > 2:1289156/1‑99 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATT < 2:1877331/99‑1 CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTA < 2:415935/99‑1 ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAA > 2:280859/1‑99 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAA < 1:80340/99‑1 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTT < 1:38862/99‑1 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTT > 1:1368717/1‑99 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTT < 1:2392834/99‑1 TACACTAAATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATAC < 2:1431971/99‑1 CTAAATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATG > 1:2057578/1‑99 AAATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCT < 2:1810199/99‑1 ATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGC < 1:1320154/99‑1 ATCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGC < 2:1264058/99‑1 TCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCC < 1:98669/99‑1 TCAGTAAGTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCC > 2:1212688/1‑99 GTTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACC < 1:2112789/99‑1 TTGGCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCA > 1:627157/1‑99 GCAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAA > 2:819117/1‑99 CAGCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAA < 1:2414138/99‑1 GCATCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGT > 2:110765/1‑99 TCACCTAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGC > 1:868089/1‑99 CAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1979173‑1979270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGC > NC_000913/3807700‑3807793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |