| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 4,542,831 | IS5 (+) +4 bp | 20.7% | intergenic (+198/‑281) | fimE → / → fimA | regulator for fimA/type 1 fimbriae major subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 25 (0.250) | 24/176 | NT | 18.0% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 4542831 = | 109 (1.150) | intergenic (+198/‑284) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 32 (0.320) | 29/176 | NT | 21.9% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 4542834 | 109 (1.150) | intergenic (+201/‑281) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
Only 100 of 236 total aligned reads displayed.
AAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAG > NC_000913/4542736‑4542932 | tcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa < 1:1737127‑M2/4‑1 (MQ=255)tcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa > 2:1460233‑M2/96‑99 (MQ=255)tcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa > 1:554678‑M2/96‑99 (MQ=255) caaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAc < 1:1350751‑M2/5‑1 (MQ=255) aaaTATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAc > 1:1282332/1‑99 (MQ=255) aaaTATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAc > 2:185140/1‑99 (MQ=255) aaTATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACg > 1:1288399/1‑99 (MQ=255) aaTATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACg > 1:386729/1‑99 (MQ=255) ttAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTc > 2:1029688/1‑99 (MQ=255) tAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCt < 1:2366716/99‑1 (MQ=255) aaaaaaCGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCtg < 1:2292205/99‑1 (MQ=255) aaaaaCGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCtgt < 2:173725/99‑1 (MQ=255) aaaCGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAggaaggtgcga < 2:1320478‑M2/99‑12 (MQ=255) aCGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCt > 1:260622/1‑99 (MQ=255) ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACGTTTCTGTGGCTc > 1:186303‑M2/82‑99 (MQ=255) gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACGTTTCTGTGGCTCg > 1:605101‑M2/81‑99 (MQ=255) cAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGAc > 1:1757779/1‑99 (MQ=255) aaaaaGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtc > 2:923603‑M2/1‑81 (MQ=255) aaaaGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGc > 2:1580773/1‑99 (MQ=255) aaaGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCa < 1:430157/99‑1 (MQ=255) aaaGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCa < 1:1019104/99‑1 (MQ=255) gCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtccctga < 2:1224744‑M2/99‑24 (MQ=255) tCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTcc > 2:1690122/1‑99 (MQ=255) tCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTcc < 1:225404/99‑1 (MQ=255) ggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACGTTTCTGTGGCTCGACGCATCTTcc < 2:2355429‑M2/30‑1 (MQ=255) aaCTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtccctgatatgag < 2:2243643‑M2/99‑30 (MQ=255) cTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCAtt > 1:1308757/1‑99 (MQ=255) cTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCAtt < 1:254674/99‑1 (MQ=255) cTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCAtt > 2:2116870/1‑99 (MQ=255) cTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCAtt > 2:2184346/1‑99 (MQ=255) aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACGTTTCTGTGGCTCGACGCATCTTCCTCAtt > 2:533680‑M2/65‑99 (MQ=255) aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACGTTTCTGTGGCTCGACGCATCTTCCTCAtt < 2:1812048‑M2/35‑1 (MQ=255) atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACGTTTCTGTGGCTCGACGCATCTTCCTCAttcttc < 2:2525240‑M2/39‑1 (MQ=255) tGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATtcttct < 1:2450437/99‑1 (MQ=255) gATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtt > 2:1361026‑M2/1‑62 (MQ=255) gATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTtctc > 2:1546851/1‑99 (MQ=255) atatGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTtctct > 2:1274368/1‑99 (MQ=255) tatGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTtctctc < 2:1576389/99‑1 (MQ=255) tatGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTtctctc > 1:2038017/1‑99 (MQ=255) tGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtc < 2:1201068‑M2/99‑42 (MQ=255) tGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCa > 1:2184788/1‑99 (MQ=255) tGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCa > 1:998576/1‑99 (MQ=255) gTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtca > 1:313452‑M2/1‑57 (MQ=255) aaTTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct < 2:2330082‑M2/99‑46 (MQ=255) attattTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAac > 2:1063838/1‑99 (MQ=255) attattTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAac > 1:1475592/1‑99 (MQ=255) tattTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAacca > 1:1186824/1‑99 (MQ=255) tttCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc < 1:888855‑M2/99‑51 (MQ=255) ttCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCt < 2:2370127/99‑1 (MQ=255) tCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca < 2:585522‑M2/99‑53 (MQ=255) tgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCa < 1:1844243‑M2/57‑1 (MQ=255) tATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCAt < 2:479791/99‑1 (MQ=255) tATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCAt > 2:2545483/1‑99 (MQ=255) gagtcagccgagaagaatttccccgcttattcgcaccttccCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCAt < 2:1989964‑M2/58‑1 (MQ=255) ttGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGc > 2:2595404/1‑99 (MQ=255) ttGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGc > 1:2421330/1‑99 (MQ=255) gTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCaa < 1:1091462/99‑1 (MQ=255) agccgagaagaatttccccgcttattcgcaccttccCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAat > 1:1080869‑M2/37‑99 (MQ=255) aaaTTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAata > 1:1866136/1‑99 (MQ=255) aattaattTCACATCACCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg < 1:2495627‑M2/99‑62 (MQ=255) attTCACATCACCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca < 1:1619943‑M2/99‑67 (MQ=255) tttCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAt > 1:2444203/1‑99 (MQ=255) tCACATCACCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatca > 2:1050746‑M2/1‑30 (MQ=255) cacaTCACCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat < 2:330252‑M2/99‑71 (MQ=255) acaTCACCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg < 1:1343618‑M2/99‑72 (MQ=255) tCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTataaa > 1:1119203/1‑99 (MQ=255) tCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTataaa < 2:1455869/99‑1 (MQ=255) tCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTataaa < 2:279502/99‑1 (MQ=255) aCCTCCGCTATATGTAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca < 1:1363752‑M2/99‑77 (MQ=255) aCCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTataaata > 1:1106203/1‑99 (MQ=255) ccTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTataaataa > 1:1691270/1‑99 (MQ=255) tattcgcaccttccCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGAt > 1:1980230‑M2/15‑99 (MQ=255) cGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGAt > 2:754040/1‑99 (MQ=255) cGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGAt > 1:569900/1‑99 (MQ=255) cTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATaa > 1:914146/1‑99 (MQ=255) tcgcaccttccCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAAc < 2:782471‑M2/88‑1 (MQ=255) tataTGTAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactta < 1:2329091‑M2/99‑85 (MQ=255) tatGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACaa > 2:1810413/1‑99 (MQ=255) tGTAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctt < 2:1663947‑M2/99‑89 (MQ=255) tAAAGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcg < 1:1455391‑M2/99‑91 (MQ=255) aaGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgcc < 2:2044843‑M2/99‑93 (MQ=255) aaGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAat > 1:1525345/1‑99 (MQ=255) aaGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAat > 1:2088477/1‑99 (MQ=255) aGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAata < 1:756514/99‑1 (MQ=255) gCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccga < 2:1787391‑M2/99‑95 (MQ=255) gCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccga < 1:676804‑M2/99‑95 (MQ=255) cCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAatat < 2:2035753‑M2/98‑1 (MQ=255) cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac < 1:1536028‑M2/99‑96 (MQ=255) cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac < 1:631115‑M2/99‑96 (MQ=255) cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac < 1:280618‑M2/99‑96 (MQ=255) cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac < 2:1348889‑M2/99‑96 (MQ=255) ttaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacgttcgccgaca < 2:874348‑M2/97‑97 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca > 1:370331‑M2/1‑3 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacag > 2:427694‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacag > 2:1107038‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacag > 2:2050064‑M2/1‑2 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt < 2:709472‑M2/99‑99 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt > 1:548702‑M2/1‑1 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt > 2:342066‑M2/1‑1 (MQ=255) aCGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAg < 2:2581193/99‑1 (MQ=255) | AAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAG > NC_000913/4542736‑4542932 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |