mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 39.6% | 54.9 / 33.0 | 53 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 2,406,563 | 0 | T | C | 25.7% | 103.9 / 42.2 | 70 | T27A (ACT→GCT) | lrhA | DNA‑binding transcriptional dual regulator LrhA |
| * | NC_000913 | 1,521,183 | 0 | T | . | 25.4% | 147.0 / 42.6 | 55 | coding (1883/2103 nt) | yncD | putative TonB‑dependent outer membrane receptor |
| * | NC_000913 | 4,032,731 | 0 | T | G | 25.4% | 121.1 / 10.5 | 56 | G80G (GGT→GGG) | yigZ | IMPACT family member YigZ |
| * | NC_000913 | 4,287,719 | 0 | T | A | 25.0% | 109.7 / 12.8 | 48 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase |
| * | NC_000913 | 501,191 | 1 | . | G | 24.5% | 96.9 / 50.3 | 49 | coding (1067/1305 nt) | gsk | inosine/guanosine kinase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 21.1% | 105.1 / 22.7 | 52 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3584195 | NA (NA) | 9 (0.140) | 9/274 | 3.8 | 12.2% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4260759 = | 65 (1.010) | coding (161/708 nt) | yjbM | uncharacterized protein YjbM | |||||
| * | ? | NC_000913 | = 1050545 | NA (NA) | 9 (0.140) | 9/274 | 3.8 | 12.2% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4260759 = | 65 (1.010) | coding (161/708 nt) | yjbM | uncharacterized protein YjbM | |||||
| * | ? | NC_000913 | = 4092609 | 69 (1.080) | 4 (0.060) | 4/268 | 5.4 | 5.6% | coding (215/447 nt) | frvA | putative PTS enzyme IIA component FrvA |
| ? | NC_000913 | 4092613 = | 68 (1.080) | coding (211/447 nt) | frvA | putative PTS enzyme IIA component FrvA | |||||
| * | ? | NC_000913 | 3579378 = | 89 (1.390) | 4 (0.070) | 3/254 | 5.7 | 4.8% | coding (268/696 nt) | yhhW | quercetin 2,3‑dioxygenase |
| ? | NC_000913 | 3579481 = | 77 (1.290) | coding (165/696 nt) | yhhW | quercetin 2,3‑dioxygenase | |||||
| * | ? | NC_000913 | = 97490 | 49 (0.760) | 3 (0.050) | 3/268 | 5.9 | 6.0% | coding (404/1317 nt) | murD | UDP‑N‑acetylmuramoyl‑L‑alanine‑‑D‑glutamate ligase |
| ? | NC_000913 | 97496 = | 46 (0.730) | coding (410/1317 nt) | murD | UDP‑N‑acetylmuramoyl‑L‑alanine‑‑D‑glutamate ligase | |||||
| * | ? | NC_000913 | = 2667202 | 54 (0.840) | 3 (0.050) | 3/272 | 6.0 | 5.2% | coding (645/1140 nt) | hcaT | putative 3‑phenylpropionate transporter |
| ? | NC_000913 | 3260943 = | 55 (0.860) | coding (1476/2295 nt) | tdcE | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase 4 | |||||
| * | ? | NC_000913 | = 339645 | 40 (0.620) | 3 (0.050) | 3/272 | 6.0 | 7.1% | coding (1321/1419 nt) | yahG | DUF1116 domain‑containing protein YahG |
| ? | NC_000913 | 339649 = | 39 (0.610) | coding (1325/1419 nt) | yahG | DUF1116 domain‑containing protein YahG | |||||
| * | ? | NC_000913 | 290634 = | NA (NA) | 3 (0.050) | 3/274 | 6.0 | 4.4% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4260759 = | 65 (1.010) | coding (161/708 nt) | yjbM | uncharacterized protein YjbM | |||||