mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,734,535 | 0 | T | C | 66.7% | 57.4 / 29.4 | 27 | coding (500/732 nt) | pgeF | polyphenol oxidase YfiH |
| * | NC_000913 | 4,604,344 | 0 | C | T | 47.9% | 24.6 / 37.6 | 48 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,111,747 | 0 | G | T | 30.6% | 78.4 / 15.8 | 36 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 4,580,095 | 0 | A | C | 30.4% | 83.5 / 17.3 | 46 | G456G (GGT→GGG) | hsdS | type I restriction enzyme EcoKI specificity protein |
| * | NC_000913 | 4,555,106 | 0 | C | A | 28.2% | 96.6 / 15.9 | 39 | N177K (AAC→AAA) | uxuR | DNA‑binding transcriptional repressor UxuR |
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.5% | 119.2 / 46.4 | 69 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,491,098 | 0 | A | C | 25.0% | 122.1 / 10.8 | 56 | Y66S (TAC→TCC) | cybB | cytochrome b561 |
| * | NC_000913 | 4,429,984 | 0 | T | G | 23.3% | 98.5 / 11.4 | 43 | L41V (TTG→GTG) | cycA | serine/alanine/glycine/cycloserine:H(+)symporter |
| * | NC_000913 | 646,747 | 0 | T | G | 21.9% | 96.9 / 10.4 | 41 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 2,326,450 | 0 | T | G | 20.0% | 95.9 / 12.4 | 40 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3189562 = | 89 (1.390) | 3 (0.050) | 3/262 | 6.1 | 3.5% | pseudogene (2131/2434 nt) | yqiG | putative outer membrane usher protein YqiG |
| ? | NC_000913 | = 3189558 | 81 (1.340) | pseudogene (2127/2434 nt) | yqiG | putative outer membrane usher protein YqiG | |||||
| * | ? | NC_000913 | = 1840556 | 67 (1.050) | 3 (0.050) | 3/270 | 6.2 | 3.9% | coding (1090/1308 nt) | ynjE | molybdopterin synthase sulfurtransferase |
| ? | NC_000913 | = 3547712 | 84 (1.340) | coding (1154/1317 nt) | gntT | high‑affinity gluconate transporter | |||||
| * | ? | NC_000913 | = 2584986 | 42 (0.660) | 3 (0.050) | 3/276 | 6.3 | 7.3% | coding (540/1980 nt) | aegA | putative oxidoreductase Fe‑S subunit AegA |
| ? | NC_000913 | = 2585056 | 34 (0.530) | coding (470/1980 nt) | aegA | putative oxidoreductase Fe‑S subunit AegA | |||||