mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.2% | 43.8 / 30.4 | 38 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 375102 = | NA (NA) | 8 (0.260) | 3/218 | 3.1 | NA | noncoding (17/36 nt) | other | REP31d |
| ? | NC_000913 | 377351 = | NA (NA) | noncoding (16/37 nt) | other | REP32a | |||||
| * | ? | NC_000913 | = 2941507 | 28 (0.710) | 3 (0.080) | 3/258 | 3.5 | 9.5% | coding (125/396 nt) | ygdD | conserved inner membrane protein YgdD |
| ? | NC_000913 | = 2941815 | 31 (0.840) | coding (753/918 nt) | gcvA | DNA‑binding transcriptional dual regulator GcvA | |||||
| * | ? | NC_000913 | = 299188 | 23 (0.580) | 3 (0.080) | 3/272 | 3.7 | 12.4% | coding (1747/2199 nt) | paoC | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| ? | NC_000913 | 299192 = | 20 (0.520) | coding (1743/2199 nt) | paoC | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit | |||||