New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1999928	50 (1.020)	5 (0.110)	3/246	4.3	11.7%	coding (458/801 nt)	tcyJ	cystine ABC transporter periplasmic binding protein
	?	NC_000913	= 2009249	31 (0.710)					coding (973/1206 nt)	yedE	putative selenium transporter YedE
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCAACGAGGATCGCATCGATACGCCCTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGT  >  NC_000913/1999795‑2000061                                                                                                                                      |                                                                                                                                      aTCAACGAGGATCGCATCGATACGCCCTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGAcccaccagt                                                                                                                                 <  1:578553/140‑7 (MQ=255)        aGGATCGCATCGATACGCCCTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGcc                                                                                                                          >  1:775427/1‑140 (MQ=255)            tCGCATCGATACGCCCTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGGCACTCTTCATAGGTTGAGCCCAGACCGACCCCCACTTTTCTGCCTTTc                                                                                                                      >  2:365159/1‑140 (MQ=255)            tCGCATCGATACGCCCTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTc                                                                                                                      >  1:754352/1‑140 (MQ=255)            tCGCATCGATACGCCCTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGACACTCTTCATAGGTGGGGCCCAGACGGACCGCCACTTTTTTGCCTTTc                                                                                                                      >  2:221035/1‑140 (MQ=255)                aTCGATACGCCCTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGat                                                                                                                  >  1:586509/1‑140 (MQ=255)                 tCGATACGCCCTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGatc                                                                                                                 >  1:591994/1‑140 (MQ=255)                   gATACGCCCTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTACATAGTTGGTGCTCAGCCCGACCCCCACTTTTTTGCCTTTCAGatcat                                                                                                               >  2:299406/1‑140 (MQ=255)                      aCGCCCTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCgg                                                                                                            <  2:660625/140‑1 (MQ=255)                       cGCCCTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGc                                                                                                           <  2:591994/140‑1 (MQ=255)                       cGCCCTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGc                                                                                                           <  1:603019/140‑1 (MQ=255)                        gCCCTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCt                                                                                                          >  1:433846/1‑140 (MQ=255)                           cTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGtt                                                                                                       <  2:693970/140‑1 (MQ=255)                                   aGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGt                                                                                               >  2:410019/1‑140 (MQ=255)                                               ttGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTAcc                                                                                   >  2:440873/1‑140 (MQ=255)                                                                     tACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATa                                                             >  2:72178/1‑140 (MQ=255)                                                                         cacaTCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAg                                                         >  1:544167/1‑140 (MQ=255)                                                                           caTCGACGCCCTGAACATTCTGTCGCAGCCACTCTTCATGGTTGGTGCTCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGaa                                                       <  2:298556/140‑1 (MQ=255)                                                                           caTCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGaa                                                       <  1:585108/140‑1 (MQ=255)                                                                            aTCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGaaa                                                      >  2:21784/1‑140 (MQ=255)                                                                            aTCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGaaa                                                      <  1:21784/140‑1 (MQ=255)                                                                              cGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATg                                                    <  1:72178/140‑1 (MQ=255)                                                                              cGACGCCCTGAACATCCTGCCGCAGTCACTCTTCATACTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATg                                                    <  1:221035/140‑1 (MQ=255)                                                                                   cccTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTa                                               <  1:440873/140‑1 (MQ=255)                                                                                    ccTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTAc                                              <  2:544167/140‑1 (MQ=255)                                                                                        aaCATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTa                                               <  1:756574/135‑1 (MQ=255)                                                                                        aaCATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTa                                               >  2:756574/1‑135 (MQ=255)                                                                                        aaCATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACgggg                                          >  1:404910/1‑140 (MQ=255)                                                                                         aCATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCGGAAATGGTGTACGGGGt                                         <  1:48846/140‑1 (MQ=255)                                                                                             tCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTgag                                     >  2:565574/1‑140 (MQ=255)                                                                                               tGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGaa                                   >  1:777840/1‑140 (MQ=255)                                                                                                      gCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTGACCAGCGCGTGATTACCGGAAATGGAGTACAGGGTTGAGAAATCGTAt                            >  2:398084/1‑140 (MQ=255)                                                                                                            ctTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTc                      >  2:684835/1‑140 (MQ=255)                                                                                                                 tAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTgcg                 <  2:404910/140‑1 (MQ=255)                                                                                                                 tAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTgcg                 <  1:410019/140‑1 (MQ=255)                                                                                                                 tAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTgcg                 <  2:433846/140‑1 (MQ=255)                                                                                                                 tAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTgcg                 <  1:565574/140‑1 (MQ=255)                                                                                                                 tAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTAAATACCAGAAATAGAGGACGGGGTTGAGAAATCGTATTTTTTCTTgcg                 >  2:389113/1‑140 (MQ=255)                                                                                                                 tAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTGCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTgcg                 <  1:365159/140‑1 (MQ=255)                                                                                                                 tAGTTGGTGCCCAGACCGACCCCCACTTTATTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCACCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTgcg                 <  1:299406/140‑1 (MQ=255)                                                                                                                    ttGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCtc              <  2:777840/140‑1 (MQ=255)                                                                                                                     tGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCtca             >  1:737967/1‑140 (MQ=255)                                                                                                                       gTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCtcatc           >  1:444244/1‑140 (MQ=255)                                                                                                                       gTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGAACGGGGTGGAGAAATCGTATTATTTCTTGCGCtcatc           >  1:258203/1‑140 (MQ=255)                                                                                                                        tGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCtcatca          <  2:586509/140‑1 (MQ=255)                                                                                                                         gCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAg         >  2:423985/1‑140 (MQ=255)                                                                                                                         gCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAg         <  2:754352/140‑1 (MQ=255)                                                                                                                               accgaccCCCACTTTTTTGCCTTTCAGGTCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATgg   >  2:467523/1‑140 (MQ=255)                                                                                                                               accgaccCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATgg   >  2:112196/1‑140 (MQ=255)                                                                                                                               accgaccCCCACTTTATTGCCTATCTGATAATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATgg   <  1:389113/140‑1 (MQ=255)                                                                                                                                ccgaccCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGt  <  2:775427/140‑1 (MQ=255)                                                                                                                                      |                                                                                                                                      ATCAACGAGGATCGCATCGATACGCCCTACGCGCAGATCCTGATATTTGGTCGGGTCATCATCATAGGTACGCACATCGACGCCCTGAACATTCTGCCGCAGCCACTCTTCATAGTTGGTGCCCAGACCGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGT  >  NC_000913/1999795‑2000061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.