Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,468,599	Δ4 bp	coding (386‑389/921 nt)	yfdH →	CPS‑53 (KpLE1) prophage; bactoprenol glucosyl transferase

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2468599	2468602	4	58 [0]	[0] 55	yfdH	CPS‑53 (KpLE1) prophage; bactoprenol glucosyl transferase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2468598	0 (0.000)	55 (1.120)	43/276	0.1	100%	coding (385/921 nt)	yfdH	CPS‑53 (KpLE1) prophage; bactoprenol glucosyl transferase
	?	NC_000913	2468603 =	0 (0.000)					coding (390/921 nt)	yfdH	CPS‑53 (KpLE1) prophage; bactoprenol glucosyl transferase

TGCAACCGGGGATGCGATAATCCCAATTGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCTGAAGCGAAAAACGGCTGAGTGGTTCTATAAGCTCCACAATAAAATAAGCAATCCTAAAATTGAAGAGAATGTTGGTGATTTCAGGCTGATGAGCCGTGATGTTGTCGAAAATATTAAACTTATGCCAGAACGAAACCT  >  NC_000913/2468459‑2468737                                                                                                                                            |                                                                                                                                            tGCAACCGGTGATGCGATAATCCCAATTGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGcc                                                                                                                                             >  2:181109/1‑140 (MQ=255) tGCAACCGGGGATGCGATAATCCCAATTGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGcc                                                                                                                                             >  2:49134/1‑140 (MQ=255) tGCAACCGGGGATGCGATAATCCCAATTGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGcc                                                                                                                                             >  2:185667/1‑140 (MQ=255)      ccGGGGATGCGATAATTCCAATTGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATCTGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaa                                                                                                                                        <  2:513777‑M1/140‑6 (MQ=255)                 aTAATCCCAATTGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgag                                                                                                                             <  1:169718‑M1/140‑17 (MQ=255)                 aTAATCCCAATTGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgag                                                                                                                             <  2:555666‑M1/140‑17 (MQ=255)                 aTAATCCCAATTGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgag                                                                                                                             <  1:831432‑M1/140‑17 (MQ=255)                 aTAATCCCAATTGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgag                                                                                                                             <  1:617307‑M1/140‑17 (MQ=255)                 aTAATCCCAATTGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgag                                                                                                                             <  2:21824‑M1/140‑17 (MQ=255)                 aTAATCCCAATTGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgag                                                                                                                             <  1:49134‑M1/140‑17 (MQ=255)                   aaTCCCAATTGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtg                                                                                                                           <  1:501198‑M1/140‑19 (MQ=255)                           ttGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctata                                                                                                                   >  2:117457‑M1/1‑114 (MQ=255)                           ttGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctata                                                                                                                   <  1:679015‑M1/140‑27 (MQ=255)                               tGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagct                                                                                                               <  2:675143‑M1/140‑31 (MQ=255)                                gTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctgtaagctc                                                                                                              >  2:113290‑M1/1‑109 (MQ=255)                                  tGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACACCgtgaaaaacggctgactggttctataagctcca                                                                                                            >  2:332920‑M1/1‑107 (MQ=255)                                        gCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataa                                                                                                      >  2:422610‑M1/1‑101 (MQ=255)                                         cAAGACCCGATTGAGGTTATTCCTCATCTTATTGAGAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgcgtcgttctagaagctccacaataaa                                                                                                     >  1:385443‑M1/1‑100 (MQ=255)                                                      aGGTTATTCCTCATCTTATTGACAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatccta                                                                                        <  1:374708‑M1/140‑54 (MQ=255)                                                         ttATTCCTCATCTTATTGAAAACTGGCAAGCAGGTCCTGCTATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaa                                                                                     <  2:282162‑M1/140‑57 (MQ=255)                                                         ttATTCCTCATCTTATTCAAAAATGGCAAGCTGGTCCTGTTATGGTTCCTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaa                                                                                     <  2:232360‑M1/140‑57 (MQ=255)                                                           aTTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataag                                                                                                >  1:32023‑M1/1‑82 (MQ=255)                                                           aTTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataag                                                                                                <  2:32023‑M1/127‑46 (MQ=255)                                                             tCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggatgagtggttctaaaaggtccacaattaaataagcaatcctaaaattga                                                                                 >  2:249705‑M1/1‑80 (MQ=255)                                                              ccTCATCTTATTGAACAATGGCCAGCAGGCGCTGATACGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaa                                                                                <  1:247282‑M1/140‑62 (MQ=255)                                                              ccTCATCTTATTGAAAAATGGCAAGTAGGAGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaa                                                                                <  1:332920‑M1/140‑62 (MQ=255)                                                                  aTCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagaga                                                                            <  1:76621‑M1/140‑66 (MQ=255)                                                                     ttATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggatctataagctccgcaataaaataagcaatcctaaaattgaagagaatg                                                                         >  2:261520‑M1/1‑72 (MQ=255)                                                                      tATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgt                                                                        >  1:31820‑M1/1‑71 (MQ=255)                                                                       aTTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgtt                                                                       >  2:640057‑M1/1‑70 (MQ=255)                                                                          gAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggt                                                                    >  2:126032‑M1/1‑67 (MQ=255)                                                                          gAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACAGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggt                                                                    <  1:729673‑M1/140‑74 (MQ=255)                                                                           aaaaaTGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtg                                                                   >  1:736184‑M1/1‑66 (MQ=255)                                                                                   cAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcagg                                                           <  1:117457‑M1/140‑83 (MQ=255)                                                                                     aGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggct                                                         >  2:139085‑M1/1‑56 (MQ=255)                                                                                        aGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgat                                                      <  1:657955‑M1/140‑88 (MQ=255)                                                                                         ggTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctgtaagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatg                                                     <  1:113290‑M1/140‑89 (MQ=255)                                                                                            gCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagc                                                  >  1:171320‑M1/1‑49 (MQ=255)                                                                                                   tGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatg                                           <  1:185667‑M1/140‑99 (MQ=255)                                                                                                    ggTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaaaagaatgttggtcatgtcaggctgatgagccgtgatgt                                          >  1:383330‑M1/1‑41 (MQ=255)                                                                                                     gTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgtt                                         >  1:591430‑M1/1‑40 (MQ=255)                                                                                                     gTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgtgggtgatttcaggtggatgagctgtgatgtt                                         >  2:378773‑M1/1‑40 (MQ=255)                                                                                                          tGCTAAAAGATCTGAGCGCTCACCTGATGAACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgttgtcga                                    <  1:374677‑M1/140‑106 (MQ=255)                                                                                                          tGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgttgtcga                                    <  2:736184‑M1/140‑106 (MQ=255)                                                                                                          tGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgttgtcga                                    <  1:181109‑M1/140‑106 (MQ=255)                                                                                                          tGCTAAAAGATCTGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgttgtcga                                    >  1:444637‑M1/1‑35 (MQ=255)                                                                                                            cTAAAAGATCTGACCCCTCAACCGAAGGATGCCgcgacaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgttgtcgaaa                                  <  1:249705‑M1/140‑108 (MQ=255)                                                                                                                      tGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgttgtcgaaaatatt                             <  1:201984‑M1/135‑113 (MQ=255)                                                                                                                      tGACCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgttgtcgaaaatatt                             >  2:201984‑M1/1‑23 (MQ=255)                                                                                                                        aCCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgttgtcgaaaatattaaactta                      >  2:26551‑M1/1‑21 (MQ=255)                                                                                                                        aCCGCTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttagtgatttccggctgatcagccgtgatgttgtcgaaaatattaaactta                      >  2:311996‑M1/1‑21 (MQ=255)                                                                                                                            cTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctggtgagccgagatattatcggaagtattaaacttatgcc                  >  1:360559‑M1/1‑17 (MQ=255)                                                                                                                            cTCAACTGATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgttgtcgaaaatattaaacttatgcc                  <  1:139085‑M1/140‑124 (MQ=255)                                                                                                                                   gATGGACGCCgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgttgtcgaaaatattaaacttatgccagaacga           <  1:26551‑M1/140‑131 (MQ=255)                                                                                                                                         cgccgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgttgtcgaaaatattgaacttatgccagaacgaaacctt     >  2:176791‑M1/1‑4 (MQ=255)                                                                                                                                         cgccgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgttgtcgaaaatattaaacttatgccagaacgaaacctt     <  2:591430‑M1/140‑137 (MQ=255)                                                                                                                                         cgccgcgaaaaacggcacagtgcttctatacgctcgacagtaaaataaacaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgttgtcgaaaatattaaacttatgccagaacgaaacctt     <  2:383330‑M1/140‑137 (MQ=255)                                                                                                                                            cgcgaaaaacggctgagtggttctataagctccacaataaaataagcaatcctaaaattgaagagaatgttggtgatttcaggctgatgagccgtgatgttgtcgaaaatattaaacttatgccagaacgaaaccttttc  >  2:134716‑M1/1‑1 (MQ=255)                                                                                                                                            |                                                                                                                                            TGCAACCGGGGATGCGATAATCCCAATTGATGTTGACCTGCAAGACCCGATTGAGGTTATTCCTCATCTTATTGAAAAATGGCAAGCAGGTGCTGATATGGTTCTTGCTAAAAGATCTGACCGCTCAACTGATGGACGCCTGAAGCGAAAAACGGCTGAGTGGTTCTATAAGCTCCACAATAAAATAAGCAATCCTAAAATTGAAGAGAATGTTGGTGATTTCAGGCTGATGAGCCGTGATGTTGTCGAAAATATTAAACTTATGCCAGAACGAAACCT  >  NC_000913/2468459‑2468737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑