mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,669,820 | 0 | T | C | 65.4% | 95.7 / 61.8 | 78 | L41P (CTG→CCG) | ynfM | putative transporter YnfM |
| * | NC_000913 | 308,047 | 1 | . | C | 56.5% | 38.4 / 33.7 | 23 | coding (1286/2526 nt) | ecpC | putative fimbrial usher protein EcpC |
| * | NC_000913 | 3,847,542 | 0 | T | C | 56.5% | 3.9 / 22.4 | 23 | P361P (CCA→CCG) | uhpC | inner membrane protein sensing glucose‑6‑phosphate |
| * | NC_000913 | 1,097,392 | 1 | . | G | 55.6% | ‑4.8 / 10.4 | 9 | intergenic (+563/+173) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| * | NC_000913 | 673,601 | 0 | C | T | 53.1% | ‑4.8 / 40.8 | 32 | A395T (GCC→ACC) | leuS | leucine‑‑tRNA ligase |
| * | NC_000913 | 3,047,248 | 0 | G | A | 52.2% | ‑5.7 / 64.1 | 46 | C598C (TGC→TGT) | gcvP | glycine decarboxylase |
| * | NC_000913 | 1,432,643 | 0 | A | G | 48.1% | 52.0 / 188.4 | 131 | D78G (GAC→GGC) | tfaR | Rac prophage; putative tail fiber assembly protein TfaR |
| * | NC_000913 | 4,296,060 | 0 | C | T | 43.3% | 43.5 / 77.5 | 67 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 139,221 | 0 | A | C | 41.7% | 0.4 / 103.9 | 60 | W669G (TGG→GGG) | gcd | quinoprotein glucose dehydrogenase |
| * | NC_000913 | 4,407,834 | 0 | A | G | 40.3% | 28.2 / 68.7 | 62 | Q394R (CAG→CGG) | rnr | RNase R |
| * | NC_000913 | 4,426,699 | 0 | A | G | 37.1% | 51.1 / 67.0 | 70 | Y242H (TAT→CAT) | yjfZ | protein YjfZ |
| * | NC_000913 | 2,557,079 | 0 | G | A | 35.2% | 55.5 / 43.1 | 54 | S73S (AGC→AGT) | eutC | ethanolamine ammonia‑lyase subunit beta |
| * | NC_000913 | 4,604,344 | 0 | C | T | 34.9% | 83.1 / 20.0 | 63 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 1,810,641 | 0 | G | C | 33.3% | 55.1 / 47.0 | 42 | G144A (GGC→GCC) | ydjM | putative inner membrane protein regulated by LexA |
| * | NC_000913 | 2,326,450 | 0 | T | G | 27.3% | 81.3 / 16.4 | 44 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 53 (0.880) | 10 (0.180) | 8/258 | 3.2 | 14.6% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 67 (1.190) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||