mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 48.9% | 22.2 / 36.4 | 47 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 29,496 | 0 | T | A | 47.6% | 12.3 / 16.5 | 21 | intergenic (+301/‑155) | dapB/carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/carbamoyl phosphate synthetase subunit alpha |
| * | NC_000913 | 2,001,918 | 0 | A | C | 40.9% | 17.4 / 13.2 | 22 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 4,568,504 | 0 | T | G | 40.0% | 38.1 / 10.4 | 35 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| * | NC_000913 | 4,111,747 | 0 | G | T | 39.3% | 44.8 / 18.8 | 28 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 650,809 | 0 | T | G | 36.7% | 36.4 / 13.3 | 30 | T350P (ACC→CCC) | citC | citrate lyase synthetase |
| * | NC_000913 | 2,326,450 | 0 | T | G | 28.1% | 57.0 / 12.8 | 32 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 1,427,875 | 0 | C | T | 25.0% | 110.9 / 29.2 | 52 | R284R (CGG→CGA) | insH‑5 | Rac prophage; IS5 transposase and trans‑activator |
| * | NC_000913 | 1,427,893 | 0 | C | T | 20.4% | 120.4 / 20.7 | 49 | P278P (CCG→CCA) | insH‑5 | Rac prophage; IS5 transposase and trans‑activator |
| * | NC_000913 | 4,296,060 | 0 | C | T | 20.0% | 83.8 / 15.4 | 40 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 61 (1.290) | 10 (0.240) | 9/244 | 2.6 | 17.3% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 42 (1.010) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 4037157 | NA (NA) | 3 (0.060) | 3/270 | 4.9 | NA | noncoding (17/77 nt) | ileT | tRNA‑Ile |
| ? | NC_000913 | 4037161 = | NA (NA) | noncoding (21/77 nt) | ileT | tRNA‑Ile | |||||
| * | ? | NC_000913 | = 225397 | NA (NA) | 3 (0.060) | 3/270 | 4.9 | NA | noncoding (17/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913 | 225401 = | NA (NA) | noncoding (21/77 nt) | ileV | tRNA‑Ile | |||||