mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 46.2% | 37.5 / 51.3 | 65 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 2,001,918 | 0 | A | C | 37.8% | 63.3 / 19.9 | 45 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 4,568,504 | 0 | T | G | 36.8% | 123.3 / 13.4 | 76 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| * | NC_000913 | 646,747 | 0 | T | G | 35.5% | 41.8 / 16.3 | 31 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 2,326,450 | 0 | T | G | 30.8% | 109.4 / 38.3 | 65 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 372,640 | 0 | T | G | 28.3% | 105.1 / 13.2 | 53 | L176V (TTA→GTA) | mhpD | 2‑hydroxypentadienoate hydratase |
| * | NC_000913 | 4,101,514 | 0 | G | T | 27.6% | 136.2 / 26.6 | 58 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter |
| * | NC_000913 | 4,098,155 | 0 | A | C | 25.4% | 142.0 / 12.4 | 67 | L140F (TTA→TTC) | rhaS | DNA‑binding transcriptional activator RhaS |
| * | NC_000913 | 4,296,060 | 0 | C | T | 22.2% | 169.9 / 42.1 | 81 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,404,218 | 0 | T | G | 20.0% | 122.5 / 10.1 | 50 | G245G (GGT→GGG) | yhdH | acrylyl‑CoA reductase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 76 (1.050) | 15 (0.230) | 14/244 | 2.8 | 17.8% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 71 (1.110) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 374945 = | NA (NA) | 9 (0.120) +T |
5/274 | 5.8 | NA | noncoding (15/34 nt) | other | REP31a |
| ? | NC_000913 | 377408 = | NA (NA) | noncoding (15/34 nt) | other | REP32b | |||||
| * | ? | NC_000913 | 4373295 = | NA (NA) | 7 (0.100) | 4/256 | 6.0 | NA | noncoding (2/34 nt) | other | REP328b |
| ? | NC_000913 | 4374499 = | NA (NA) | noncoding (1/34 nt) | other | REP329a | |||||
| * | ? | NC_000913 | = 731994 | 78 (1.070) | 3 (0.040) | 3/276 | 6.8 | 3.7% | coding (2412/4194 nt) | rhsC | rhs element protein RhsC |
| ? | NC_000913 | 732003 = | NA (NA) | coding (2421/4194 nt) | rhsC | rhs element protein RhsC | |||||