mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 35 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,404,735 | 0 | T | C | 48.1% | ‑5.4 / 117.9 | 79 | intergenic (+277/‑701) | yhdH/accB | acrylyl‑CoA reductase/biotin carboxyl carrier protein |
| * | NC_000913 | 2,064,165 | 0 | C | . | 40.6% | 134.7 / 98.9 | 64 | coding (303/1080 nt) | cobT | nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase |
| * | NC_000913 | 2,064,166 | 0 | A | . | 40.6% | 132.2 / 93.8 | 64 | coding (302/1080 nt) | cobT | nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase |
| * | NC_000913 | 876,147 | 0 | A | G | 40.0% | 30.9 / 84.2 | 70 | E271E (GAA→GAG) | dgcI | putative diguanylate cyclase DgcI |
| * | NC_000913 | 3,123,653 | 0 | A | G | 37.7% | 38.7 / 64.7 | 61 | R51R (CGT→CGC) | glcB | malate synthase G |
| * | NC_000913 | 24,849 | 0 | A | G | 37.5% | 43.3 / 68.1 | 64 | N820S (AAC→AGC) | ileS | isoleucine‑‑tRNA ligase |
| * | NC_000913 | 4,604,344 | 0 | C | T | 37.0% | 51.6 / 19.2 | 46 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 631,409 | 0 | T | C | 36.5% | 34.2 / 52.9 | 52 | S506P (TCT→CCT) | cstA | carbon starvation protein A |
| * | NC_000913 | 888,014 | 0 | T | G | 36.2% | 81.6 / 12.0 | 47 | noncoding (44/81 nt) | rybB | small regulatory RNA RybB |
| * | NC_000913 | 371,582 | 1 | . | G | 35.5% | 23.9 / 49.8 | 31 | coding (344/867 nt) | mhpC | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioate hydrolase |
| * | NC_000913 | 4,002,617 | 0 | A | G | 34.7% | 64.6 / 73.0 | 72 | C61C (TGT→TGC) | yigF | DUF2628 domain‑containing protein YigF |
| * | NC_000913 | 449,283 | 0 | A | G | 34.0% | 34.2 / 43.6 | 47 | G453G (GGT→GGC) | cyoB | cytochrome bo3 ubiquinol oxidase subunit 1 |
| * | NC_000913 | 3,206,435 | 0 | C | T | 32.5% | 58.2 / 18.2 | 40 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 692,938 | 0 | A | C | 31.7% | 69.8 / 10.5 | 41 | G147G (GGT→GGG) | ybeZ | PhoH‑like protein |
| * | NC_000913 | 4,098,155 | 0 | A | C | 30.6% | 97.0 / 13.4 | 49 | L140F (TTA→TTC) | rhaS | DNA‑binding transcriptional activator RhaS |
| * | NC_000913 | 1,966,127 | 0 | T | C | 30.1% | 103.4 / 67.4 | 83 | E22G (GAA→GGA) | flhB | flagellar biosynthesis protein FlhB |
| * | NC_000913 | 3,382,296 | 0 | T | C | 29.7% | 80.6 / 51.3 | 64 | S33P (TCC→CCC) | degS | serine endoprotease |
| * | NC_000913 | 3,299,017 | 0 | A | G | 29.1% | 75.1 / 39.6 | 55 | D15G (GAT→GGT) | yhbO | protein/nucleic acid deglycase 2 |
| * | NC_000913 | 1,491,103 | 0 | A | C | 28.8% | 112.2 / 12.9 | 52 | T68P (ACC→CCC) | cybB | cytochrome b561 |
| * | NC_000913 | 3,844,219 | 0 | T | G | 27.8% | 116.8 / 10.7 | 54 | F86V (TTT→GTT) | adeD | adenine deaminase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4373261 = | NA (NA) | 8 (0.160) | 3/228 | 5.5 | NA | intergenic (+99/+104) | yjeI/yjeJ | DUF4156 domain‑containing lipoprotein YjeI/protein YjeJ |
| ? | NC_000913 | 4374533 = | NA (NA) | intergenic (‑299/+96) | yjeJ/epmB | protein YjeJ/lysine 2,3‑aminomutase | |||||