mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 38.8% | 71.6 / 70.4 | 67 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,604,344 | 0 | C | T | 37.2% | 49.9 / 26.7 | 43 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 39 (0.620) | 4 (0.070) | 4/258 | 5.1 | 7.1% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 68 (1.160) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 3288276 | 74 (1.180) | 4 (0.070) | 4/270 | 5.2 | 5.2% | coding (187/696 nt) | yraI | putative fimbrial chaperone YraI |
| ? | NC_000913 | 3288280 = | 72 (1.180) | coding (191/696 nt) | yraI | putative fimbrial chaperone YraI | |||||