mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 40.3% | 76.1 / 43.9 | 67 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,111,747 | 0 | G | T | 31.7% | 86.7 / 27.4 | 41 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 4,296,060 | 0 | C | T | 24.7% | 163.1 / 48.6 | 81 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 117 (1.330) | 20 (0.260) | 17/244 | 2.7 | 18.4% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 74 (0.950) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 101 (1.150) | 16 (0.210) | 15/244 | 3.1 | 16.6% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 72 (0.930) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 1533414 = | 87 (0.990) | 4 (0.050) | 4/268 | 6.7 | 4.5% | coding (438/570 nt) | yddH | flavin reductase‑like protein YddH |
| ? | NC_000913 | = 1533410 | 86 (1.010) | coding (442/570 nt) | yddH | flavin reductase‑like protein YddH | |||||
| * | ? | NC_000913 | = 3226189 | 91 (1.030) | 4 (0.050) | 3/250 | 7.0 | 4.1% | intergenic (+18/‑45) | ebgC/ygjI | DUF386 domain‑containing evolved beta‑D‑galactosidase subunit beta/putative transporter YgjI |
| ? | NC_000913 | = 3226285 | 105 (1.320) | coding (52/1434 nt) | ygjI | putative transporter YgjI | |||||
| * | ? | NC_000913 | = 2728285 | NA (NA) | 3 (0.030) | 3/270 | 7.3 | NA | noncoding (900/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | NC_000913 | 2728290 = | NA (NA) | noncoding (895/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 1379264 | 81 (0.920) | 3 (0.030) | 3/272 | 7.3 | 3.6% | coding (1381/2268 nt) | ycjT | kojibiose phosphorylase |
| ? | NC_000913 | 1379269 = | 82 (0.950) | coding (1386/2268 nt) | ycjT | kojibiose phosphorylase | |||||
| * | ? | NC_000913 | = 3462821 | 110 (1.250) | 3 (0.030) | 3/274 | 7.4 | 2.7% | coding (478/588 nt) | gspJ | Type II secretion system protein GspJ |
| ? | NC_000913 | 3462825 = | 109 (1.250) | coding (482/588 nt) | gspJ | Type II secretion system protein GspJ | |||||