mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 806,654 | G→T | L210M (CTG→ATG) | ybhC ← | outer membrane lipoprotein YhbC |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 1,994,427 | C→A | V94F (GTT→TTT) | uvrC ← | excision nuclease subunit C |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,268,638 | C→A | G270G (GGC→GGA) | yeiR → | zinc‑binding GTPase YeiR |
| RA | 2,573,227 | C→A | P93P (CCG→CCT) | eutD ← | phosphate acetyltransferase EutD |
| RA | 2,841,042 | A→G | Q18R (CAG→CGG) | ascB → | 6‑phospho‑beta‑glucosidase AscB |
| RA | 3,005,245 | C→A | R181L (CGG→CTG) | ygeV ← | putative sigma(54)‑dependent transcriptional regulator YgeV |
| RA | 3,020,348 | C→A | G396G (GGC→GGA) | ssnA → | putative aminohydrolase |
| RA | 3,057,387 | G→T | H342N (CAC→AAC) | serA ← | phosphoglycerate dehydrogenase |
| RA | 3,075,476 | T→A | Q236L (CAG→CTG) | yggF ← | fructose 1,6‑bisphosphatase YggF |
| RA | 3,097,077 | C→A | P133T (CCG→ACG) | rdgB → | dITP/XTP pyrophosphatase |
| RA | 3,184,476 | (A)7→8 | intergenic (‑10/‑364) | ribB ← / → ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| RA | 3,332,531 | G→T | P69T (CCA→ACA) | yhbE ← | inner membrane protein YhbE |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,358,782 | C→A | S1353Y (TCC→TAC) | gltB → | glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,594,825 | G→T | P219Q (CCG→CAG) | livM ← | branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,919,330 | G→T | T176T (ACC→ACA) | atpA ← | ATP synthase F1 complex subunit alpha |
| RA | 3,931,855 | G→T | L180L (CTG→CTT) | kup → | K(+):H(+) symporter Kup |
| RA | 4,111,769 | G→T | S149* (TCG→TAG) | yiiQ ← | DUF1454 domain‑containing protein YiiQ |
| RA | 4,164,581 | C→A | Q315K (CAA→AAA) | btuB → | cobalamin/cobinamide outer membrane transporter |
| RA | 4,215,728 | C→A | P84H (CCT→CAT) | aceB → | malate synthase A |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,277,388 | C→A | intergenic (‑5/‑81) | soxS ← / → soxR | DNA‑binding transcriptional dual regulator SoxS/DNA‑binding transcriptional dual regulator SoxR |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102950 | 3104069 | 1120 | 23 [22] | [20] 23 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423785–3424233 | 3424531–3424239 | 7–747 | 26 [21] | [20] 24 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 109 (1.280) | 64/268 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 130 (1.480) | 133 (1.520) | 74/274 | 0.0 | 66.8% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 3 (0.030) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 118 (1.340) | 62/276 | 0.2 | 95.9% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 5 (0.060) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||