mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.4% | 128.9 / 87.3 | 93 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,568,504 | 0 | T | G | 34.3% | 294.1 / 12.3 | 141 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| * | NC_000913 | 4,604,344 | 0 | C | T | 31.8% | 182.6 / 60.4 | 126 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 445,558 | 0 | A | C | 31.5% | 106.2 / 14.3 | 54 | V370G (GTA→GGA) | yajR | putative major facilitator superfamily transport protein YajR |
| * | NC_000913 | 650,809 | 0 | T | G | 29.5% | 164.8 / 22.6 | 78 | T350P (ACC→CCC) | citC | citrate lyase synthetase |
| * | NC_000913 | 2,001,918 | 0 | A | C | 27.3% | 201.5 / 29.7 | 89 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 4,111,747 | 0 | G | T | 27.0% | 163.3 / 31.1 | 63 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 4,032,731 | 0 | T | G | 20.8% | 199.0 / 11.0 | 77 | G80G (GGT→GGG) | yigZ | IMPACT family member YigZ |
| * | NC_000913 | 3,926,366 | 0 | A | C | 20.5% | 315.0 / 18.5 | 122 | G30G (GGT→GGG) | mioC | flavoprotein MioC |
| * | NC_000913 | 753,125 | 0 | T | A | 20.5% | 230.9 / 17.7 | 83 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 208 (1.570) | 33 (0.280) | 27/246 | 2.7 | 17.1% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 136 (1.160) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 191 (1.440) | 21 (0.180) | 17/246 | 4.5 | 12.3% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 131 (1.120) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 4542682 = | 128 (0.970) | 9 (0.070) | 9/260 | 7.0 | 6.6% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 134 (1.080) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 1209618 | 131 (0.990) | 6 (0.050) | 5/248 | 8.5 | 4.5% | pseudogene (38/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment |
| ? | NC_000913 | 2471897 = | 136 (1.150) | pseudogene (166/519 nt) | yfdL | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YfdL | |||||
| * | ? | NC_000913 | = 4542690 | 121 (0.920) | 5 (0.040) | 5/260 | 8.8 | 3.9% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 134 (1.080) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 2200891 | 156 (1.180) | 3 (0.020) | 3/272 | 10.2 | 1.9% | coding (613/3633 nt) | yehI | DUF4132 domain‑containing protein YehI |
| ? | NC_000913 | 2200895 = | 156 (1.210) | coding (617/3633 nt) | yehI | DUF4132 domain‑containing protein YehI | |||||
| * | ? | NC_000913 | = 2049175 | 131 (0.990) | 4 (0.030) | 3/272 | 10.2 | 3.0% | coding (4238/7077 nt) | yeeJ | inverse autotransporter adhesin |
| ? | NC_000913 | 2049179 = | 128 (0.990) | coding (4242/7077 nt) | yeeJ | inverse autotransporter adhesin | |||||
| * | ? | NC_000913 | = 2876654 | 128 (0.970) | 3 (0.020) | 3/276 | 10.3 | 2.3% | coding (74/1038 nt) | iap | alkaline phosphatase isozyme conversion protein |
| ? | NC_000913 | 2876660 = | 129 (0.980) | coding (80/1038 nt) | iap | alkaline phosphatase isozyme conversion protein | |||||