mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 42.9% | 26.7 / 14.9 | 28 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 3,206,435 | 0 | C | T | 38.5% | 21.9 / 16.8 | 26 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 2,326,450 | 0 | T | G | 33.3% | 48.5 / 19.3 | 33 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 1,427,783 | 0 | A | G | 31.1% | 157.2 / 94.3 | 106 | V315A (GTG→GCG) | insH‑5 | Rac prophage; IS5 transposase and trans‑activator |
| * | NC_000913 | 4,213,051 | 0 | A | C | 28.6% | 19.1 / 10.3 | 14 | noncoding (12/120 nt) | rrfE | 5S ribosomal RNA |
| * | NC_000913 | 1,427,803 | 0 | G | C | 27.9% | 279.3 / 119.9 | 122 | T308T (ACC→ACG) | insH‑5 | Rac prophage; IS5 transposase and trans‑activator |
| * | NC_000913 | 3,234,672 | 0 | T | A | 22.6% | 62.5 / 16.5 | 31 | intergenic (‑217/+67) | higB/rlmG | ribosome‑dependent mRNA interferase toxin HigB/23S rRNA m(2)G1835 methyltransferase |
| * | NC_000913 | 1,428,700 | 0 | A | G | 20.8% | 199.6 / 50.5 | 96 | D9D (GAT→GAC) | insH‑5 | Rac prophage; IS5 transposase and trans‑activator |
| * | NC_000913 | 2,782,509 | 0 | A | C | 20.0% | 155.0 / 11.4 | 66 | V73G (GTA→GGA) | ypjA | adhesin‑like autotransporter YpjA |
| * | NC_000913 | 3,231,280 | 0 | C | G | 20.0% | 71.6 / 15.1 | 32 | intergenic (+41/‑385) | ygjK/fadH | glycoside hydrolase/2,4‑dienoyl‑CoA reductase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 20.0% | 93.9 / 17.7 | 45 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 33 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 555833 | 50 (1.220) | 12 (0.330) | 9/244 | 2.1 | 19.5% | coding (1223/1386 nt) | cysS | cysteine‑‑tRNA ligase |
| ? | NC_000913 | = 556784 | 55 (1.520) | coding (90/213 nt) | ybcJ | putative RNA‑binding protein YbcJ | |||||
| * | ? | NC_000913 | = 2518224 | 39 (0.950) | 7 (0.200) | 6/240 | 2.9 | 17.5% | noncoding (8/76 nt) | alaW | tRNA‑Ala |
| ? | NC_000913 | = 2521179 | 32 (0.900) | noncoding (7/76 nt) | valY | tRNA‑Val | |||||
| * | ? | NC_000913 | 1462089 = | 41 (1.000) | 11 (0.290) | 6/252 | 3.0 | 23.3% | coding (1197/1206 nt) | paaJ | beta‑ketoadipyl‑CoA thiolase |
| ? | NC_000913 | 1462223 = | 35 (0.940) | coding (99/1314 nt) | paaK | phenylacetate‑CoA ligase | |||||
| * | ? | NC_000913 | 845700 = | NA (NA) | 4 (0.130) | 4/210 | 3.2 | NA | intergenic (‑220/+41) | ybiO/glnQ | moderate conductance mechanosensitive channel/L‑glutamine ABC transporter ATP binding subunit |
| ? | NC_000913 | = 3012524 | NA (NA) | intergenic (+131/+90) | yqeA/yqeB | putative amino acid kinase YqeA/XdhC‑CoxI family protein YqeB | |||||
| * | ? | NC_000913 | 375248 = | NA (NA) | 11 (0.310) | 5/238 | 3.2 | NA | noncoding (15/34 nt) | other | REP31g |
| ? | NC_000913 | 377507 = | NA (NA) | noncoding (16/34 nt) | other | REP32d | |||||
| * | ? | NC_000913 | 3139703 = | NA (NA) | 6 (0.160) | 5/248 | 3.3 | NA | noncoding (35/36 nt) | other | REP221b |
| ? | NC_000913 | 3150668 = | NA (NA) | noncoding (29/29 nt) | other | REPv222c | |||||
| * | ? | NC_000913 | = 2518067 | 32 (0.780) | 5 (0.140) | 5/248 | 3.3 | 18.3% | noncoding (50/76 nt) | alaX | tRNA‑Ala |
| ? | NC_000913 | = 2521099 | 16 (0.440) | noncoding (49/76 nt) | valX | tRNA‑Val | |||||
| * | ? | NC_000913 | 2568141 = | NA (NA) | 4 (0.120) | 4/224 | 3.4 | NA | noncoding (2/34 nt) | other | REP178a |
| ? | NC_000913 | 3234722 = | NA (NA) | noncoding (3/34 nt) | other | REP233b | |||||
| * | ? | NC_000913 | = 374963 | NA (NA) | 7 (0.180) | 5/268 | 3.5 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377387 | NA (NA) | intergenic (+76/+148) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 2518109 | 35 (0.850) | 5 (0.140) | 4/240 | 3.6 | 13.8% | noncoding (8/76 nt) | alaX | tRNA‑Ala |
| ? | NC_000913 | = 2521179 | 32 (0.900) | noncoding (7/76 nt) | valY | tRNA‑Val | |||||