New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1563689	18 (0.570)	9 (0.290)	9/276	1.5	33.4%	coding (2045/2400 nt)	dosP	oxygen‑sensing c‑di‑GMP phosphodiesterase DosP
	?	NC_000913	1563703 =	18 (0.580)					coding (2031/2400 nt)	dosP	oxygen‑sensing c‑di‑GMP phosphodiesterase DosP

ATCGACAAAACTTTTGTCAATTTTGATTTCCGTTACCGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1563559‑1563689 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGATTAGGCAGTTGATTACTGCGAAAGTGCAGCGCC  >  NC_000913/1563703‑1563823                                                                                                                                                                                                                                                              ATCGACAAAACTTTTGTCAATTTTGATTTCCGTTACCGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTATCGTGTTC                                                                                                                  >  1:336726/1‑140              TTGTCAATTTTGATTTCCGTTACCGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTATCGTGTTCCATCATCATGCTT                                                                                                     <  1:228044/140‑1                          ATTTCCGTTACCGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTATCGTGTTCCATCATCATGCTTTCCGTGATTTCT                                                                                         >  2:249687/1‑140                                        AAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTG                                                                           <  2:269175/140‑1                                                                         CGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGA                                          <  1:180010/140‑1                                                                                   TCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGATTA                                <  1:249687/140‑1                                                                                                            TATCACGCAGGATCTGAATGCGCTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGGTTAGGCAGTTGATTACTGCGAAAGTGCA       >  2:119751/1‑140                                                                                                               CACGCAGGATCTGAATGCGCTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGATTAGGCAGTTGATTACTGCGAAAGTGCAGCG    <  1:223831/140‑1                                                                                                                 CGCAGGATCTGAATGCGCTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGATTAGGCAGTTGATTACTGCGAAAGTGCAGCGCC  >  2:412672/1‑140                                                                                                                                                                                                                                                              ATCGACAAAACTTTTGTCAATTTTGATTTCCGTTACCGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1563559‑1563689 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGATTAGGCAGTTGATTACTGCGAAAGTGCAGCGCC  >  NC_000913/1563703‑1563823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.