| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1563689 | 18 (0.570) | 9 (0.290) | 9/276 | 1.5 | 33.4% | coding (2045/2400 nt) | dosP | oxygen‑sensing c‑di‑GMP phosphodiesterase DosP |
| ? | NC_000913 | 1563703 = | 18 (0.580) | coding (2031/2400 nt) | dosP | oxygen‑sensing c‑di‑GMP phosphodiesterase DosP | |||||
ATCGACAAAACTTTTGTCAATTTTGATTTCCGTTACCGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGATTAGGCAGTTGATTACTGCGAAAGTGCAGCGCCGACA > NC_000913/1563559‑1563827 | aTCGACAAAACTTTTGTCAATTTTGATTTCCGTTACCGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTatcgtgttc > 1:336726‑M1/1‑131 (MQ=255) aCAAAACTTTTGTCAATTTTGATTTCCGTTACCGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGt > 2:135654/1‑140 (MQ=255) ttGTCAATTTTGATTTCCGTTACCGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTatcgtgttccatcatcatgctt < 1:228044‑M1/140‑23 (MQ=255) ttttGATTTCCGTTACCGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCcatcatc > 1:3304/1‑140 (MQ=255) aTTTCCGTTACCGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTatcgtgttccatcatcatgctttccgtgatttct > 2:249687‑M1/1‑106 (MQ=255) tttCCGTTACCGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCtt < 2:20957/140‑1 (MQ=255) gTTACCGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGt < 2:444294/140‑1 (MQ=255) ccGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGAtt < 1:113547/140‑1 (MQ=255) aaGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTatcgtgttccatcatcatgctttccgtgatttctaccgtcagctggtg < 2:269175‑M1/140‑49 (MQ=255) gactgactAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTAcc > 1:372840/1‑140 (MQ=255) ggATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGc < 1:135654/140‑1 (MQ=255) ggATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGc < 2:500825/140‑1 (MQ=255) aTAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCg > 1:84668/1‑140 (MQ=255) cccGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGc > 2:250662/1‑140 (MQ=255) cGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTatcgtgttccatcatcatgctttccgtgatttctaccgtcagctggtggccgtcaataccccaggcgtgcattgcatcaga < 1:180010‑M1/140‑82 (MQ=255) tcatcTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTatcgtgttccatcatcatgctttccgtgatttctaccgtcagctggtggccgtcaataccccaggcgtgcattgcatcagacacctgatta < 1:249687‑M1/140‑92 (MQ=255) aaGCCCACGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGAtt > 1:361403/1‑140 (MQ=255) cccACGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGATTAgg < 1:495350/140‑1 (MQ=255) aCGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGATTAGGCAg < 2:3304/140‑1 (MQ=255) tatCACGCAGGATCTGAATGCGCTatcgtgttccatcatcatgctttccgtgatttctaccgtcagctggtggccgtcaataccccaggcgtgcattgcatcagacacctggttaggcagttgattactgcgaaagtgca > 2:119751‑M1/1‑24 (MQ=255) atCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGATTAGGCAGTTGATTAc < 2:361403/140‑1 (MQ=255) cACGCAGGATCTGAATGCGCTatcgtgttccatcatcatgctttccgtgatttctaccgtcagctggtggccgtcaataccccaggcgtgcattgcatcagacacctgattaggcagttgattactgcgaaagtgcagcg < 1:223831‑M1/140‑120 (MQ=255) cGCAGGATCTGAATGCGCTatcgtgttccatcatcatgctttccgtgatttctaccgtcagctggtggccgtcaataccccaggcgtgcattgcatcagacacctgattaggcagttgattactgcgaaagtgcagcgcc > 2:412672‑M1/1‑19 (MQ=255) cGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGATTAGGCAGTTGATTACTGCg > 1:183432/1‑140 (MQ=255) cgcTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGATTAGGCAGTTGATTACTGCGAAAGTGCAGCGCCGa > 2:49172/1‑140 (MQ=255) gcTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGATTAGGCAGTTGATTACTGCGAAAGTGCAGCGCCGAc < 2:183432/140‑1 (MQ=255) cTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGATTAGGCAGTTGATTACTGCGAAAGTGCAGCGCCGACa > 2:109520/1‑140 (MQ=255) | ATCGACAAAACTTTTGTCAATTTTGATTTCCGTTACCGGAAGACTGACTAAGCGGGATAATCCGGAAAAGCCCGTACCAAAATCATCTACCGATAAGCCCACGCCCATATCACGCAGGATCTGAATGCGCTTAAAGATTTCGGTATCGTGTTCCATCATCATGCTTTCCGTGATTTCTACCGTCAGCTGGTGGCCGTCAATACCCCAGGCGTGCATTGCATCAGACACCTGATTAGGCAGTTGATTACTGCGAAAGTGCAGCGCCGACA > NC_000913/1563559‑1563827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |