New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 3588424 = | 58 (1.070) | 5 (0.100) | 5/250 | 4.7 | 8.6% | coding (757/1071 nt) | ugpC | sn‑glycerol 3‑phosphate ABC transporter ATP binding subunit |
? | NC_000913 | 3589222 = | 53 (1.070) | coding (806/846 nt) | ugpE | sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpE | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
CCATCCGCCACATCAAGGGTCAGCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGT > NC_000913/3589092‑3589361 | ccATCCGCCACATCAAGGGTCAGCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTa > 2:649662/1‑140 (MQ=255) aGGGTCAGCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCg > 2:327963/1‑140 (MQ=255) aGCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACATTCACCACCGGAGGGa > 1:866606/1‑140 (MQ=255) gCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAGGGCACGCTGCATCACTAAAACAATcac < 2:903397/128‑1 (MQ=255) gCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAGGGCACGCTGCATCACTAAAACAATcac > 1:903397/1‑128 (MQ=255) gCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGAt < 2:920986/140‑1 (MQ=255) gCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGAt < 1:327963/140‑1 (MQ=255) cGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATa > 1:165699/1‑140 (MQ=255) tttAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGc > 2:904043/1‑140 (MQ=255) tAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGt > 2:405960/1‑140 (MQ=255) tAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGt > 1:508114/1‑140 (MQ=255) tGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAacaaca > 2:801262/1‑140 (MQ=255) tGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAacaaca < 1:858046/140‑1 (MQ=255) cATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCAt < 1:904043/140‑1 (MQ=255) tCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCa > 2:656304/1‑140 (MQ=255) tCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCa > 1:618287/1‑140 (MQ=255) ccAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACt > 1:797152/1‑140 (MQ=255) gCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAg < 1:325235/140‑1 (MQ=255) gCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAg < 2:556311/140‑1 (MQ=255) gCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAg > 1:901865/1‑140 (MQ=255) cTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCgt > 2:44436/1‑140 (MQ=255) cTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCgt > 1:424787/1‑140 (MQ=255) cTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCgt > 1:850671/1‑140 (MQ=255) cTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCgt > 1:433218/1‑140 (MQ=255) cTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCgt > 1:326971/1‑140 (MQ=255) tGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACt < 1:780270/125‑1 (MQ=255) tGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACt > 2:780270/1‑125 (MQ=255) cTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCgtggtg < 2:165699/140‑1 (MQ=255) tAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCt > 2:523941/1‑140 (MQ=255) cAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCTACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCt > 1:506447/1‑140 (MQ=255) cAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCt > 2:747291/1‑140 (MQ=255) cTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGc > 1:556754/1‑140 (MQ=255) gCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGa > 2:699257/1‑140 (MQ=255) ccATCTTATTTCTCACTATCGACCATGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGat > 2:220848/1‑140 (MQ=255) ccATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGat > 1:170219/1‑140 (MQ=255) aTCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGatca < 2:850671/140‑1 (MQ=255) tCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGatcat < 2:508114/140‑1 (MQ=255) tCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGatcat < 1:405960/140‑1 (MQ=255) aCTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATTATCCCTTTGATcc > 2:731073/1‑140 (MQ=255) aCTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATcc > 1:162171/1‑140 (MQ=255) aCTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATcc > 1:601621/1‑140 (MQ=255) aCTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCATCGCCTGTAGCGATCATCCCTTTGATcc > 2:119491/1‑140 (MQ=255) cTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATccc < 2:861467/140‑1 (MQ=255) tCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGc > 1:280598/1‑140 (MQ=255) gACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCa < 1:313492/140‑1 (MQ=255) aCCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCAc > 1:141009/1‑140 (MQ=255) aCCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCAc > 1:99961/1‑140 (MQ=255) aCCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCAc > 1:488161/1‑140 (MQ=255) ggCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACggtg < 1:649662/140‑1 (MQ=255) cgcgCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGgtggtg > 1:89372/1‑140 (MQ=255) cgcACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCTACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGcc < 2:506447/140‑1 (MQ=255) cgcACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGcc > 2:162656/1‑140 (MQ=255) cACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCga > 2:68198/1‑140 (MQ=255) aaGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCg > 2:249818/1‑135 (MQ=255) aaGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCg < 1:249818/135‑1 (MQ=255) aaGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATc > 2:1244/1‑140 (MQ=255) gCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCcac < 2:488161/140‑1 (MQ=255) aCGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACAt < 1:220848/140‑1 (MQ=255) cTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCgg < 1:656304/140‑1 (MQ=255) cTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCgg < 2:89372/140‑1 (MQ=255) tGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGt < 1:538642/140‑1 (MQ=255) | CCATCCGCCACATCAAGGGTCAGCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGT > NC_000913/3589092‑3589361 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |