| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 15387 = | NA (NA) | 4 (0.060) | 4/224 | 6.3 | 10.8% | noncoding (1/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 16732 = | 33 (0.450) | intergenic (+175/+19) | insL‑1/hokC | IS186/IS421 transposase/protein HokC | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAAT > NC_000913/15256‑15525 | cttTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAg < 1:876864/140‑1 (MQ=255) tGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAgcgc < 2:705459/140‑1 (MQ=255) tgtgAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGGA‑CCCCCCTAAACGCTAACtt > 2:876864/1‑140 (MQ=255) gtgAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTa < 1:159440/140‑1 (MQ=255) tgAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGAA‑CACCCCTCAACGCTAAATTaa > 2:574211/1‑140 (MQ=255) agaagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAggg < 1:574211/140‑1 (MQ=255) aagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAgcg > 1:130651/1‑126 (MQ=255) aagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAgcg < 2:130651/126‑1 (MQ=255) agTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTtg < 2:943203/140‑1 (MQ=255) agTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTtg < 1:537628/140‑1 (MQ=255) gTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTtgt < 2:1251704/140‑1 (MQ=255) ttGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 2:1141697/140‑1 (MQ=255) cAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg < 1:759353/140‑1 (MQ=255) gCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa < 2:1319712/140‑1 (MQ=255) tGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCA‑CTCCCCAAAACGCTTAATTAAAGGGTGTGGGGTTATGCCTGCTATGATTTTAAGTGCCGGTggaata > 2:683706/1‑135 (MQ=255) tGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGACA‑CTCCCCAAAACGCTAACTTTAAGGGTGTGGTGTTTTGCCTGATATGATTTTACACGCCGAGGAATTa > 2:1322500/1‑140 (MQ=255) gCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCA‑CTCCCCTAAACGCCAAATTAAAGGGTGTGGGGTTTTGCCTGATATGTTTTAAAGTGCCGATGAAATaa > 2:807478/1‑139 (MQ=255) cccGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACCCCCCATAA‑CGCTTACTTTAAGGGTGGGGGGTTTCGCCTGGTATGTTTTAAAGTGGCGGTGAAATaat > 2:1500505/1‑138 (MQ=255) cccGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct < 1:1500505/140‑1 (MQ=255) cagggTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTg < 1:15557/138‑1 (MQ=255) ggTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCA‑CCCCCCTAAACGCCAAATTTAAGGGTGGGGGGTTTTGCCTGATATTATTTTAAATGCCGATGAATTATTCTCCCCATAAATTGTc > 2:379631/1‑140 (MQ=255) ggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCCTAAACGCTAACTTAAGGGGTGTGGGATTACGCCCGATATTATTTAAAGTGCCGATGAATTACTCTCCCGATAAATTGTCAGCAAATcctt > 2:15557/1‑137 (MQ=255) ggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg < 2:997208/140‑1 (MQ=255) gTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc < 1:379631/140‑1 (MQ=255) gTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc < 1:771965/140‑1 (MQ=255) gTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc < 1:1455177/140‑1 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCA‑CTCCCCTAAACGCTAACTTAAGGGGTGTGGTATTTCGCCCGATATTATTTTACGTGCCGATGAATTAATCTCACCATAAATGGTCAGCAATTCTTGcccc > 2:1455177/1‑139 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCA‑CTCCCCTAAAAGCTCAATTTAGGGGTGTGGTTTTACGGCCGATATGATTTTAAGTGCCGCGGAATTAATCTCACGATAAATGGTTAGCAATTTTGGgccc > 2:1081742/1‑139 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCat < 2:812521/140‑1 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTa < 1:813843/140‑1 (MQ=255) gCGAGCACCTGTAAAGTGGCGGGGAGCA‑CCCCCCTAAGCGCTAACTTTAGGGGTGTGGTGTTTCGCCCGATATGATTTAAAGTGCCGGTGAATTAATCTCACCATAAATCGGCAGCAATTTTTGCCCATATTGGGTAGcc > 2:691107/1‑140 (MQ=255) aGCACCTGTAAAGTGGCGGGGAGCA‑CTCCCCCAAACGCTAACTTAAAGGGTGTGGGATTTCGCCTGGTATGATTTTACGTGCCGATGAATTACTCTCACGATAAATGGTCAGCAATTCTTGCCCCTATTTGTAAACCCgc > 2:425818/1‑139 (MQ=14) tGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACt < 1:1081742/140‑1 (MQ=255) ggggGTCA‑CTCCCCTAAGCGCCCACTTTAGGGGTGTGGTATTACGCCTGATATGATTTAAAGTGCCGCTGAATTAATCTCCCGATAAATGGTCAGCAATTCTTGCCCCTATTTGTAAGCCCGCAGAACTGGATACTTCgg > 2:634726/1‑140 (MQ=11) ggggATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCgg < 1:17620/140‑1 (MQ=34) gggAGCA‑CTCCCATAAGCGCTAACTTTAGGGTTGTGGTGTTACGCCTGATATGATTTAACGTGCCGAAGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCCTATTGGTAAACCCGAAGAACTGGGTACTTCggg > 2:1430360/1‑139 (MQ=11) cTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAAt > 2:218400/1‑140 (MQ=11) | CTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCA‑CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAAT > NC_000913/15256‑15525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |