New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	15387 =	NA (NA)	4 (0.060)	4/224	6.3	10.8%	noncoding (1/1345 nt)	IS186	repeat region
	?	NC_000913	16732 =	33 (0.450)					intergenic (+175/+19)	insL‑1/hokC	IS186/IS421 transposase/protein HokC
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGAT  >  NC_000913/16601‑16870                                                                                                                                     |                                                                                                                                           gTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTcccc                                                                                                                                    >  1:804649/1‑140 (MQ=34)  tGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCccg                                                                                                                                   >  2:512039/1‑140 (MQ=34)  tGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCccg                                                                                                                                   >  1:889385/1‑140 (MQ=34)    gCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCccgcc                                                                                                                                 >  2:497343/1‑140 (MQ=37)         tCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGc                                                                                                                            >  2:1155280/1‑140 (MQ=40)                aCAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCACCCCTTAA‑GTTAGCGCTTAGGGGATCACTCCCCGCCGTTGCTCTTACt                                                                                                                     <  1:630176/140‑1 (MQ=255)                aCAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACt                                                                                                                     <  1:1418880/140‑1 (MQ=255)                aCAGTACCCTTAACACCCCACAAAACGCAATAAAAAACCGGGAGGCTTGGTGTTAGCGGGGCCCCGAGGGCCCGCTTTCTCCAGATGGTTAACCCTTTAA‑GTTAGCGCTTAGGGGATCACCCCCCGCCGTTGCTCTTACt                                                                                                                     <  2:1369731/140‑1 (MQ=255)                  aGTTTCCCTAACAGCCTAAAAAACCCAATTGAAGAACGCGAGGCTTCGTCTTAACGAGGCCCCGAGGCGTCGCATTCTTCAGATGTTTCACCCCTTAA‑GTTAGCCCTTATGGGATCCCCCCCCGCCGTTGCTCTTACTCg                                                                                                                   <  2:889385/140‑1 (MQ=14)                  aGTATCCCTGACAGCCTAAAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCACCCCTTAA‑GTTAGCGCTTATGGGATCCCCCCCCGCCGTTGCTCTTACTCg                                                                                                                   <  2:220806/140‑1 (MQ=255)                   gTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCgg                                                                                                                  >  1:1369731/1‑140 (MQ=255)                         cggccacccTACAAACGGCATTGAAAGACCGCGAGGCTTTGTTTTAACGAGCCACCGAGGCCTCCCTTTCTTCGGATGGTTCAACCTTAAA‑GTTAGCGCTTATGGGATCCCCCCCCGCCGTTGCTCTTACTCGGATTCGt                                                                                                            <  2:441506/133‑1 (MQ=12)                           gACACCCTAAAAACCGCAATTGAAGAAGGCGGGGCATCGTCTTAACGGGGCACCGAGGCGCGTCATTCTTCGGATGGTTCACCCCTTAA‑GTTAGCGCTTATGGGATCCCTCCCCGCCGTTGCTCTTACTCGGATTCGTaa                                                                                                          <  2:1472344/140‑1 (MQ=17)                            aCAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAg                                                                                                         >  1:746963/1‑140 (MQ=255)                              aGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGcc                                                                                                       >  1:1103296/1‑140 (MQ=255)                                ccTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑A‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTg                                                                                                    >  2:1511938/1‑140 (MQ=255)                                    cAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGaaa                                                                                                 <  1:1155280/140‑1 (MQ=255)                                            aaTTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCAAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAAc                                                                                         >  1:378972/1‑140 (MQ=255)                                                      cgcgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCGCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTgg                                                                               >  1:307717/1‑140 (MQ=255)                                                        cgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGcc                                                                             >  1:649460/1‑140 (MQ=255)                                                        cgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGcc                                                                             >  2:129453/1‑140 (MQ=255)                                                           ggCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGt                                                                          >  2:640982/1‑140 (MQ=255)                                                                   tttAACGAGCCACGGAGGCGTCGCATTCTTCTGATTTTTC‑ACCCTTAATGTGAGTGTTTGTGGGATCCCCCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGAtgt                                                                  <  2:746963/139‑1 (MQ=255)                                                                       aCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAAc                                                              >  1:640206/1‑140 (MQ=255)                                                                                     cGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCtt                                                <  1:512039/140‑1 (MQ=255)                                                                                     cGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTAGGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCtt                                                <  2:775144/140‑1 (MQ=255)                                                                                       tCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCtttt                                              >  1:545694/1‑140 (MQ=255)                                                                                                tcAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCATTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTAcc                                     >  1:782995/1‑140 (MQ=255)                                                                                                 cAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCa                                    >  1:851111/1‑140 (MQ=255)                                                                                                       gTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGcgccg                              >  1:752842/1‑140 (MQ=255)                                                                                                        ttCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGcgccgc                             >  1:658660/1‑140 (MQ=255)                                                                                                         tCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCgccgcc                            >  1:1316445/1‑140 (MQ=255)                                                                                                         tCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCgccgcc                            >  2:1416914/1‑140 (MQ=255)                                                                                                                ttAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGCCTTTTCTCGTTACCAGCGCCGCCACTAcgg                     >  1:965215/1‑140 (MQ=255)                                                                                                                taaa‑GTAAGCGTTTAGGGGACCCCCCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTAcgg                     <  1:31939/138‑1 (MQ=255)                                                                                                                 tAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTAcggc                    >  2:1299181/1‑140 (MQ=255)                                                                                                                  aa‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTAcggcg                   >  2:391567/1‑140 (MQ=255)                                                                                                                  aa‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTAcggcg                   >  1:343886/1‑140 (MQ=255)                                                                                                                  aa‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTAcggcg                   >  1:786100/1‑140 (MQ=255)                                                                                                                        aGCGCTTATTGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGAt              >  1:1170983/1‑140 (MQ=255)                                                                                                                        aGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTgct              >  2:883903/1‑138 (MQ=255)                                                                                                                        aGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGAt              >  1:783751/1‑140 (MQ=255)                                                                                                                        aGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGAt              >  1:1012509/1‑140 (MQ=255)                                                                                                                        aGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGAt              >  2:308039/1‑140 (MQ=255)                                                                                                                        aGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGAt              >  1:335004/1‑140 (MQ=255)                                                                                                                         gcgcTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATa             >  1:1433965/1‑140 (MQ=255)                                                                                                                          cgcTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATAc            >  1:1158447/1‑140 (MQ=255)                                                                                                                          cgcTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATAc            >  2:1488556/1‑140 (MQ=255)                                                                                                                               aTGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATg       >  1:276348/1‑140 (MQ=255)                                                                                                                               aTGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATg       >  2:102737/1‑140 (MQ=255)                                                                                                                               aTGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATg       >  1:331238/1‑140 (MQ=255)                                                                                                                                    aTCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGAt  >  2:1402618/1‑140 (MQ=255)                                                                                                                                     |                                                                                                                                           GTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAA‑GTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGAT  >  NC_000913/16601‑16870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.