New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 443876 = | 39 (1.160) | 4 (0.130) | 4/256 | 2.9 | 9.0% | coding (640/912 nt) | panE | 2‑dehydropantoate 2‑reductase |
? | NC_000913 | 444151 = | 45 (1.440) | coding (365/912 nt) | panE | 2‑dehydropantoate 2‑reductase | |||||
Rejected: Frequency below/above cutoff threshold. |
CATAACAATATTCGCGCCGAGCTGTGGCGCAAGCTGGCAGTCAACTGCGTGATTAATCCACTGACTGCCATCTGGAATTGCCCGAACGGTGAATTACGTCATCATCCGCAAGAAATTATGCAGATATGCGAAGAAGTCGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/444020‑443876 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgcggcggGCTGCATGGGTGGTGGTGCCCATCAGTAATGGCTGCTGAATGTTTTGCAACTCTTCGATGGTGCCCATGCCGTTGTGAATTAACAGTATTGGCGTAGTTACAGGCAGTGTGGACGCG > NC_000913/444151‑444267 CATAACAATATTCGCGCCGAGCTGTGGCGCAAGCTGGCAGTCAACTGCGTGATTAATCCACTGACTGCCATCTGGAATTGCCCGAACGGTGAATTACGTCATCATCCGCAAGAAATTATGCAGATATGCGAAGAAGTCGC < 1:447360/140‑1 CAATATTCGCGCCGAGCTGTGGCGCAAGCTGGCAGTCAACTGCGTGATTAATCCACTGACTGCCATCTGGAATTGCCCGAACGGTGAATTACGTCATCATCCGCAAGAAATTATGCAGATATGCGAAGAAGTCGCGGCGG > 2:87548/1‑140 AATATTCGCGCCGAGCTGTGGCGCAAGCTGGCAGTCAACTGCGTGATTAATCCACTGACTGCCATCTGGAATTGCCCGAACGGTGAATTACGTCATCATCCGCAAGAAATTATGCAGATATGCGAAGAAGTAGCGGCGGG > 2:412251/1‑140 GATTAATCCACTGACTGCCATCTGGAATTGCCCGAACGGTGAATTACGTCATCATCCGCAAGAAATTATGCAGATATGCGAAGAAGTCGCGGCGGGCTGCATGGGTGGGGGTGCCCATCAGTAATGGCTGCTGAATGTTT > 1:161787/1‑140 TGACTGCCATCTGGAATTGCCCGAACGGTGAATTACGTCATCATCCGCAAGAAATTATGCAGATATGCGAAGAAGTCGCGGCGGGCTGCATGGGTGGTGGTGCCCATCAGTAATGGCTGCTGAATGTTTTGCAACTCTTC < 2:161787/140‑1 TGCCCGAACGGTGAATTACGTCATCATCCGCAAGAAATTATGCAGATATGCGAAGAAGTCGCGGCGGGCTGCATGGGTGGTGGTGCCCATCAGTAATGGCTGCTGAATGTTTTGCAACTCTTCGATGGTGCCCATGCCGT < 1:412251/140‑1 GTCGCGGCGGGCTGCATGGGTGGTGGTGCCCATCAGTAATGGCTGCTGAATGTTTTGCAACTCTTCGATGGTGCCCATGCCGTTGTGAATTAACAGTATTGGCGTAGTTACAGGCAGTGTGGACGCG < 1:316370/127‑1 GTCGCGGCGGGCTGCATGGGTGGTGGTGCCCATCAGTAATGGCTGCTGAATGTTTTGCAACTCTTCGATGGTGCCCATGCCGTTGTGAATTAACAGTATTGGCGTAGTTACAGGCAGTGTGGACGCG > 2:316370/1‑127 CATAACAATATTCGCGCCGAGCTGTGGCGCAAGCTGGCAGTCAACTGCGTGATTAATCCACTGACTGCCATCTGGAATTGCCCGAACGGTGAATTACGTCATCATCCGCAAGAAATTATGCAGATATGCGAAGAAGTCGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/444020‑443876 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgcggcggGCTGCATGGGTGGTGGTGCCCATCAGTAATGGCTGCTGAATGTTTTGCAACTCTTCGATGGTGCCCATGCCGTTGTGAATTAACAGTATTGGCGTAGTTACAGGCAGTGTGGACGCG > NC_000913/444151‑444267 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |