New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	443876 =	39 (1.160)	4 (0.130)	4/256	2.9	9.0%	coding (640/912 nt)	panE	2‑dehydropantoate 2‑reductase
	?	NC_000913	444151 =	45 (1.440)					coding (365/912 nt)	panE	2‑dehydropantoate 2‑reductase
Rejected: Frequency below/above cutoff threshold.

TATAGTCGATTTCAGTGTGGCGCAGCGCGCGGATATCCTGCAACATCGACGAGATATTTTCCGCTGTGGCATCAATCACCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGCAGTTGACTGCCAGCTTGCGCCACAGCTCGGCGCGAATATTG  >  NC_000913/443738‑444015                                                                                                                                           |                                                                                                                                            tataGTCGATTTCAGTGTGGCGCAGCGCGCGGATATCCTGCAACATCGACGAGATATTTTCCGCTGTGGCATCAATCCCCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCAcc                                                                                                                                            <  2:196347/140‑1 (MQ=255)  ataGTCGATTTCAGTGTGGCGCAGCGCGCGGATATCCTGCAACATCGACGAGATATTTTCCGCTGTGGCATCAATCACCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCAccg                                                                                                                                           >  1:79452/1‑140 (MQ=255)    aGTCGATTTCAGTGTGGCGCAGCGCGCGGATATCCTGCAACATCGACGAGATATTTTCCGCTGTGGCATCAATCACCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCAccgcc                                                                                                                                         >  1:87548/1‑140 (MQ=255)       cGATTTCAGTGTGGCGCAGCGCGCGGATATCCTGCAACATCGACGAGATATTTTCCGCTGTGGCATCAATCACCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCcgcg                                                                                                                                      >  1:126694/1‑140 (MQ=255)                     cgcAGCGCGCGGATACCCTGCAATATCGACGAGATTTTTCCCGCTGTGGCATCAATCACCTGCACCACGTAACCACGCAAATCTTCTGCGGAAGTATCATGCCCTTGGCTTTGGATCTCCGCCGCGACTTCTTCGCatat                                                                                                                        <  2:257812/140‑1 (MQ=255)                      cgcgtccacactgcctgtaactacgccaatactgttaattcacaacggcatgggcaccatcgaagagttgcaaaacattcagcagccattactgatgggcaccaccacccatgcagcCCGCCGCGAc                                                                                                                                    <  1:316370‑M1/10‑1 (MQ=255)                      cgcgtccacactgcctgtaactacgccaatactgttaattcacaacggcatgggcaccatcgaagagttgcaaaacattcagcagccattactgatgggcaccaccacccatgcagcCCGCCGCGAc                                                                                                                                    >  2:316370‑M1/118‑127 (MQ=255)                            cgcgGATATCCTGCAACATCGACGAGATATTTTCCGCTGTGGCATCAATCACCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATa                                                                                                                 >  2:494367/1‑140 (MQ=255)                                    tCCTGCAACATCGACGAGATATTTTCCGCTGTGGCATCAATCACCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTg                                                                                                         >  1:165076/1‑140 (MQ=255)                                       tGCAACATCGACGAGATATTTTCCGCTGTGGCATCAATCACCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCgg                                                                                                      <  2:165076/140‑1 (MQ=255)                                        gCAACATCGACGAGATATTTTCCGCTGTGGCATCAATCACCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGga                                                                                                     >  1:487925/1‑140 (MQ=255)                                         cAACATCGACGAGATATTTTCCGCTGTGGCATCAATCACCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGgat                                                                                                    >  1:219887/1‑140 (MQ=255)                                           aCATCGACGAGATATTTTCCGCTGTGGCATCAATCACCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGgatga                                                                                                  >  1:563530/1‑140 (MQ=255)                                              tCGACGAGATATTTTCCGCTGTGGCATCAATCACCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCg                                                                                                       >  1:25336/1‑132 (MQ=255)                                              tCGACGAGATATTTTCCGCTGTGGCATCAATCACCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCg                                                                                                       <  2:25336/132‑1 (MQ=255)                                               cgacgaGATATTTTCCGCTGTGGCATCAATCACCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGAc                                                                                              >  2:93249/1‑140 (MQ=255)                                                                  acggcatgggcaccatcgaagagttgcaaaacattcagcagccattactgatgggcaccaccacccatgcagcCCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCa                                                                           <  1:412251‑M1/67‑1 (MQ=255)                                                                               ccTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGca                                                              <  2:384234/140‑1 (MQ=255)                                                                               ccTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGca                                                              >  1:7123/1‑140 (MQ=255)                                                                               ccTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGca                                                              <  1:93249/140‑1 (MQ=255)                                                                               ccTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGca                                                              <  1:494367/140‑1 (MQ=255)                                                                                   gaagagttgcaaaacattcagcagccattactgatgggcaccaccacccatgcagcCCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGcagtca                                                          <  2:161787‑M1/84‑1 (MQ=255)                                                                                   cATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGcagtca                                                          <  1:187119/140‑1 (MQ=255)                                                                                   cATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGcagtca                                                          >  2:23691/1‑140 (MQ=255)                                                                                   cATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGcagtca                                                          <  2:563530/140‑1 (MQ=255)                                                                                    aTCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGcagtcag                                                         >  2:363088/1‑140 (MQ=255)                                                                                    aTCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCCCGTTCAATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGcagtcag                                                         <  1:406685/140‑1 (MQ=255)                                                                                      cACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTg                                                       >  1:73210/1‑140 (MQ=255)                                                                                      cACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTg                                                       >  1:546419/1‑140 (MQ=255)                                                                                        cGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGa                                                     >  2:123600/1‑140 (MQ=255)                                                                                          tAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGAtt                                                   <  1:123600/140‑1 (MQ=255)                                                                                              aaacattcagcagccattactgatgggcacccccacccatgcagcCCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATc                                               >  1:161787‑M1/46‑140 (MQ=255)                                                                                                cGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCAc                                             >  2:164899/1‑140 (MQ=255)                                                                                                  cAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGc                                           >  1:523955/1‑140 (MQ=255)                                                                                                  cAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGc                                           >  2:442653/1‑140 (MQ=255)                                                                                                           tgctgAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGCAGTTGACTg                                  <  2:546419/140‑1 (MQ=255)                                                                                                           tgctgAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGCAGTTGACTg                                  <  2:73210/140‑1 (MQ=255)                                                                                                                          cccTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGCAGTTGACTGCCAGCTTGCGCcaca                   >  1:78224/1‑140 (MQ=255)                                                                                                                          cccTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGCAGTTGACTGCCAGCTTGCGCcaca                   >  2:464268/1‑140 (MQ=255)                                                                                                                          cccTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGCAGTTGACTGCCAGCTTGCGCcaca                   >  1:261709/1‑140 (MQ=255)                                                                                                                               cgcgTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGCAGTTGACTGCCAGCTTGCGCca                     <  1:556581/133‑1 (MQ=255)                                                                                                                               cgcgTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGCAGTTGACTGCCAGCTTGCGCca                     >  2:556581/1‑133 (MQ=255)                                                                                                                               cgcgTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGCAGTTGACTGCCAGCTTGCGCCACAGCTCg              >  1:190/1‑140 (MQ=255)                                                                                                                                      gATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGCAGTTGACTGCCAGCTTGCGCCACAGCTCGGCGCGaa       <  1:442653/140‑1 (MQ=255)                                                                                                                                          cCCGCCGCTACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGCAGTTGACTGCCAGCTTGCGCCACAGCTCGGCGCGAATAtt   >  2:412251‑M1/2‑140 (MQ=255)                                                                                                                                           CCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGCAGTTGACTGCCAGCTTGCGCCACAGCTCGGCGCGAATATTg  >  2:87548‑M1/1‑140 (MQ=255)                                                                                                                                           |                                                                                                                                            TATAGTCGATTTCAGTGTGGCGCAGCGCGCGGATATCCTGCAACATCGACGAGATATTTTCCGCTGTGGCATCAATCACCTGCATCACGTAATCACGCAAATCTTCTGCTGAAGTATGATGCCCTTCGCGTTCGATCACCGCCGCGACTTCTTCGCATATCTGCATAATTTCTTGCGGATGATGACGTAATTCACCGTTCGGGCAATTCCAGATGGCAGTCAGTGGATTAATCACGCAGTTGACTGCCAGCTTGCGCCACAGCTCGGCGCGAATATTG  >  NC_000913/443738‑444015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.