| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3617431 = | 133 (0.850) | 4 (0.030) | 4/250 | 9.8 | 2.9% | coding (417/765 nt) | nikD | Ni(2(+)) ABC transporter ATP binding subunit NikD |
| ? | NC_000913 | 3617751 = | 144 (1.010) | coding (737/765 nt) | nikD | Ni(2(+)) ABC transporter ATP binding subunit NikD | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTGCATAATGCTTTCCAGCAGATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3617579‑3617431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcatctcgCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCTTTCCCATCACTATGCGCACGGTGGATTTAACGGAAAACATCAACATCAGGCGGTGCTGAATAACGTTTCCCTGACCCTGAAAA > NC_000913/3617751‑3617884 TTTGCATAATGCTTTCCAGCAGATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCG < 1:1669921/140‑1TTTGCATAATGCTTTCCAGCAGATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCG < 1:2219550/140‑1TTTGCATAATGCTTTCCAGCAGATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCG < 1:25701/140‑1TTTGCATAATGCTTTCCAGCAGATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCG < 1:633727/140‑1 TGCATAATGCTTTCCAGCAGATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCT < 2:1105660/140‑1 ATAATGCTTTCCAGCAGATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCAT < 1:2177249/140‑1 AATGCTTTCCAGCAGATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCT < 1:860359/140‑1 AATGCTTTCCAGCAGATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCT < 2:50903/140‑1 ATGCTTTCCAGCAGATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTC > 2:1119397/1‑140 TGCTTTCCAGCAGATCGA‑GATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCT < 1:2007578/132‑1 TGCTTTCCAGCAGATCGA‑GATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCT > 2:2007578/1‑132 CGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCTTTCCCATCACTA > 1:1792155/1‑140 TAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCTTTCCCATCACTATGCGCACGG < 2:1792155/140‑1 TGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCTTTCCCATCACTATGCGCACGGTGGATTT > 1:1894399/1‑140 GCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCTTTCCCATCACTATGCGCACGGTGGATTTAACGGAAAACA < 2:1894399/140‑1 ATCTCGCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCTTTCCCATCACTATGCGCACGGTGGATTTAACGGAAAACATCAACATCAGGCGGTGCTGAATAACGTTTCCCTGACCCTGAAAA > 1:837413/1‑140 TTTGCATAATGCTTTCCAGCAGATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3617579‑3617431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcatctcgCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCTTTCCCATCACTATGCGCACGGTGGATTTAACGGAAAACATCAACATCAGGCGGTGCTGAATAACGTTTCCCTGACCCTGAAAA > NC_000913/3617751‑3617884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |