mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 42.1% | 12.2 / 11.4 | 19 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.8% | 38.4 / 16.2 | 26 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,525,012 | 1 | . | G | 25.0% | 34.5 / 18.2 | 20 | coding (2142/2553 nt) | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3162379 | 23 (0.810) | 5 (0.170) +TCTG |
4/256 | 2.6 | 16.8% | coding (291/1413 nt) | ftsP | cell division protein required during stress conditions |
| ? | NC_000913 | 3162380 = | 27 (0.910) | coding (290/1413 nt) | ftsP | cell division protein required during stress conditions | |||||
| * | ? | NC_000913 | 1259387 = | 28 (0.950) | 3 (0.110) | 3/260 | 3.0 | 10.3% | coding (1417/1680 nt) | dauA | aerobic C4‑dicarboxylate transporter DauA |
| ? | NC_000913 | = 1259383 | 26 (0.930) | coding (1421/1680 nt) | dauA | aerobic C4‑dicarboxylate transporter DauA | |||||