mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 32.2% | 74.0 / 28.7 | 59 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 2,001,918 | 0 | A | C | 29.8% | 97.0 / 15.4 | 47 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 753,125 | 0 | T | A | 27.3% | 167.6 / 31.2 | 77 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 4,111,747 | 0 | G | T | 27.0% | 90.9 / 18.8 | 37 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 753,114 | 0 | G | T | 22.5% | 222.6 / 11.2 | 80 | intergenic (‑319/+71) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 22.4% | 126.0 / 28.9 | 58 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,326,450 | 0 | T | G | 20.3% | 146.1 / 22.6 | 59 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| Marginal new junction evidence (lowest skew 10 of 16 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 79 (1.100) | 5 (0.070) | 5/258 | 4.9 | 6.0% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 83 (1.230) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 1428681 | 71 (1.020) | 3 (0.050) +CTTACTTACT |
3/236 | 5.5 | 7.5% | noncoding (114/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3130252 | 10 (0.150) | noncoding (107/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1396150 | 25 (0.360) | 3 (0.050) +AGTAAGTAAG |
3/236 | 5.5 | 6.3% | noncoding (107/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428681 | 71 (1.020) | noncoding (114/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1299605 | 0 (0.000) | 3 (0.050) +AGTAAGTAAG |
3/236 | 5.5 | 8.4% | noncoding (107/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428681 | 71 (1.020) | noncoding (114/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 4542682 = | 80 (1.110) | 3 (0.040) | 3/258 | 5.8 | 3.7% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 83 (1.230) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 2721524 = | 53 (0.740) | 3 (0.040) | 3/256 | 5.8 | 5.9% | coding (1572/2661 nt) | patZ | peptidyl‑lysine acetyltransferase |
| ? | NC_000913 | 2721614 = | 47 (0.700) | coding (1662/2661 nt) | patZ | peptidyl‑lysine acetyltransferase | |||||
| * | ? | NC_000913 | = 2498108 | 70 (0.970) | 3 (0.050) | 3/254 | 5.8 | 4.9% | coding (188/1239 nt) | alaC | glutamate‑‑pyruvate aminotransferase AlaC |
| ? | NC_000913 | = 2498315 | 52 (0.780) | intergenic (‑20/‑356) | alaC/ypdA | glutamate‑‑pyruvate aminotransferase AlaC/sensory histidine kinase YpdA | |||||
| * | ? | NC_000913 | 1805160 = | 78 (1.080) | 3 (0.040) | 3/260 | 5.8 | 4.2% | intergenic (+167/‑5) | arpB/yniD | putative ankyrin repeat protein B, N‑terminal fragment/uncharacterized protein YniD |
| ? | NC_000913 | 1805875 = | 62 (0.910) | coding (209/759 nt) | ydiY | acid‑inducible putative outer membrane protein YdiY | |||||
| * | ? | NC_000913 | = 1428681 | 69 (0.990) | 5 (0.070) +CTTA |
3/260 | 5.8 | 12.2% | noncoding (114/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | 3653118 = | 3 (0.040) | noncoding (113/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1428681 | 69 (0.990) | 5 (0.070) +CTTA |
3/260 | 5.8 | 11.0% | noncoding (114/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | 3366638 = | 12 (0.170) | noncoding (113/1195 nt) | IS5 | repeat region | |||||