breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,296,060	0	C	T	32.6%	65.2 / 37.8	46	intergenic (+266/+376)	gltP/yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
*	NC_000913	4,604,344	0	C	T	32.4%	51.4 / 14.1	34	S62F (TCT→TTT)	bglJ	DNA‑binding transcriptional regulator BglJ
*	NC_000913	2,326,450	0	T	G	21.2%	71.0 / 14.6	33	G114G (GGT→GGG)	atoB	acetyl‑CoA acetyltransferase

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4542690	27 (0.600)	7 (0.170)	7/258	2.7	19.7%	intergenic (+57/‑425)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
	?	NC_000913	= 4542986	32 (0.770)					intergenic (+353/‑129)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
*	?	NC_000913	111475 =	NA (NA)	8 (0.180)	6/274	3.1	NA	intergenic (+42/+174)	mutT/yacG	8‑oxo‑dGTP diphosphatase/DNA gyrase inhibitor YacG
	?	NC_000913	= 4296058	NA (NA)					intergenic (+264/+378)	gltP/yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
*	?	NC_000913	1001660 =	38 (0.850)	4 (0.090)	4/260	3.7	9.9%	coding (2445/2601 nt)	elfC	putative fimbrial usher protein ElfC
	?	NC_000913	= 1001656	37 (0.880)					coding (2441/2601 nt)	elfC	putative fimbrial usher protein ElfC
*	?	NC_000913	= 3542217	52 (1.160)	4 (0.090)	4/276	3.8	7.3%	coding (1811/2322 nt)	feoB	Fe(2(+)) transporter FeoB
	?	NC_000913	3542223 =	49 (1.090)					coding (1817/2322 nt)	feoB	Fe(2(+)) transporter FeoB