mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,111,747 | 0 | G | T | 34.6% | 51.4 / 14.1 | 26 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 4,568,504 | 0 | T | G | 34.6% | 147.7 / 12.1 | 81 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| * | NC_000913 | 4,604,344 | 0 | C | T | 31.6% | 87.3 / 25.1 | 57 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.8% | 100.9 / 43.3 | 59 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 753,125 | 0 | T | A | 21.8% | 141.7 / 13.7 | 55 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 3,926,366 | 0 | A | C | 20.4% | 227.7 / 10.9 | 88 | G30G (GGT→GGG) | mioC | flavoprotein MioC |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 48 (0.660) | 5 (0.070) | 5/258 | 5.0 | 8.2% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 67 (0.990) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 4542682 = | 45 (0.620) | 5 (0.070) | 5/258 | 5.0 | 8.4% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 67 (0.990) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 4221861 = | 157 (2.160) | 3 (0.040) | 3/262 | 6.0 | 1.9% | coding (627/2187 nt) | arpA | regulator of acetyl CoA synthetase |
| ? | NC_000913 | = 4221855 | 155 (2.250) | coding (633/2187 nt) | arpA | regulator of acetyl CoA synthetase | |||||
| * | ? | NC_000913 | = 3796825 | 92 (1.270) | 3 (0.040) | 3/270 | 6.1 | 3.2% | coding (847/960 nt) | waaC | ADP‑heptose:LPS heptosyltransferase 1 |
| ? | NC_000913 | 3796831 = | 90 (1.270) | coding (853/960 nt) | waaC | ADP‑heptose:LPS heptosyltransferase 1 | |||||
| * | ? | NC_000913 | = 2087862 | 44 (0.610) | 3 (0.040) | 3/270 | 6.1 | 6.4% | coding (397/930 nt) | yeeY | putative DNA‑binding transcriptional regulator YeeY |
| ? | NC_000913 | 2087866 = | 44 (0.620) | coding (393/930 nt) | yeeY | putative DNA‑binding transcriptional regulator YeeY | |||||
| * | ? | NC_000913 | = 1629692 | 79 (1.090) | 3 (0.040) | 3/268 | 6.1 | 3.8% | coding (1222/1461 nt) | ydfI | putative oxidoreductase YdfI |
| ? | NC_000913 | 1629696 = | 74 (1.050) | coding (1218/1461 nt) | ydfI | putative oxidoreductase YdfI | |||||
| * | ? | NC_000913 | 390683 = | 159 (2.190) | 3 (0.040) | 3/268 | 6.1 | 1.9% | pseudogene (433/1458 nt) | yaiT | putative autotransporter YaiT |
| ? | NC_000913 | = 390679 | 154 (2.180) | pseudogene (429/1458 nt) | yaiT | putative autotransporter YaiT | |||||
| * | ? | NC_000913 | = 4159342 | 54 (0.740) | 3 (0.040) | 3/276 | 6.2 | 5.3% | coding (853/918 nt) | oxyR | DNA‑binding transcriptional dual regulator OxyR |
| ? | NC_000913 | 4159346 = | 54 (0.740) | coding (857/918 nt) | oxyR | DNA‑binding transcriptional dual regulator OxyR | |||||