mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,568,504 | 0 | T | G | 38.4% | 162.0 / 29.4 | 100 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| * | NC_000913 | 4,604,344 | 0 | C | T | 34.7% | 90.8 / 40.9 | 72 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,296,060 | 0 | C | T | 33.9% | 77.1 / 53.3 | 59 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,001,918 | 0 | A | C | 28.8% | 117.2 / 17.1 | 59 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 411178 = | NA (NA) | 21 (0.250) | 15/274 | 3.1 | NA | intergenic (+126/+119) | mak/araJ | manno(fructo)kinase/putative transport protein AraJ |
| ? | NC_000913 | = 4296058 | NA (NA) | intergenic (+264/+378) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO | |||||
| * | ? | NC_000913 | 411076 = | NA (NA) | 22 (0.260) | 14/274 | 3.3 | NA | intergenic (+24/+221) | mak/araJ | manno(fructo)kinase/putative transport protein AraJ |
| ? | NC_000913 | = 4296058 | NA (NA) | intergenic (+264/+378) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO | |||||
| * | ? | NC_000913 | 508748 = | NA (NA) | 16 (0.220) +GCAAGCGTCGCATCAGGCA |
8/238 | 4.2 | NA | noncoding (17/36 nt) | other | REP48d |
| ? | NC_000913 | = 4296059 | NA (NA) | intergenic (+265/+377) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO | |||||
| * | ? | NC_000913 | = 4542690 | 76 (0.890) | 7 (0.090) | 7/258 | 4.8 | 7.6% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 98 (1.230) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 430022 | 72 (0.840) | 4 (0.050) | 4/270 | 6.1 | 5.3% | coding (518/972 nt) | secF | Sec translocon accessory complex subunit SecF |
| ? | NC_000913 | 430026 = | 72 (0.860) | coding (522/972 nt) | secF | Sec translocon accessory complex subunit SecF | |||||