mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.3% | 192.0 / 68.5 | 99 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 445,558 | 0 | A | C | 25.6% | 89.3 / 11.1 | 43 | V370G (GTA→GGA) | yajR | putative major facilitator superfamily transport protein YajR |
| * | NC_000913 | 4,111,747 | 0 | G | T | 21.1% | 112.3 / 10.9 | 38 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 3,206,435 | 0 | C | T | 20.9% | 154.4 / 22.4 | 67 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 4,604,344 | 0 | C | T | 20.8% | 237.8 / 33.3 | 107 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1411899 = | 85 (0.790) | 7 (0.080) | 7/224 | 5.6 | 7.3% | coding (50/936 nt) | ttcA | tRNA cytosine(32) 2‑sulfurtransferase TtcA |
| ? | NC_000913 | = 1434958 | 109 (1.250) | pseudogene (51/51 nt) | ttcC | putative tRNA 2‑thiocytidine (s(2)C32) synthase | |||||
| * | ? | NC_000913 | = 4542690 | 101 (0.940) | 5 (0.050) | 5/258 | 7.1 | 4.2% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 134 (1.330) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 375203 = | NA (NA) | 3 (0.040) | 3/216 | 7.3 | NA | noncoding (17/36 nt) | other | REP31f |
| ? | NC_000913 | 377351 = | NA (NA) | noncoding (16/37 nt) | other | REP32a | |||||
| * | ? | NC_000913 | 1956782 = | 135 (1.250) | 3 (0.030) | 3/264 | 8.2 | 2.3% | coding (226/2430 nt) | torZ | trimethylamine N‑oxide reductase 2 |
| ? | NC_000913 | = 1956778 | 128 (1.240) | coding (230/2430 nt) | torZ | trimethylamine N‑oxide reductase 2 | |||||
| * | ? | NC_000913 | 1516334 = | 114 (1.060) | 3 (0.030) | 3/266 | 8.2 | 2.4% | coding (757/1425 nt) | patD | gamma‑aminobutyraldehyde dehydrogenase |
| ? | NC_000913 | = 4074644 | 130 (1.250) | intergenic (+9/‑25) | yihV/yihW | 6‑deoxy‑6‑sulfofructose kinase/putative DNA‑binding transcriptional regulator YihW | |||||
| * | ? | NC_000913 | = 2075329 | 107 (0.990) | 3 (0.030) | 3/270 | 8.3 | 2.8% | coding (551/1533 nt) | yeeR | CP4‑44 prophage; inner membrane protein YeeR |
| ? | NC_000913 | 2075333 = | 103 (0.980) | coding (555/1533 nt) | yeeR | CP4‑44 prophage; inner membrane protein YeeR | |||||
| * | ? | NC_000913 | = 435906 | 125 (1.160) | 3 (0.030) | 3/274 | 8.4 | 2.4% | coding (273/978 nt) | thiL | thiamine monophosphate kinase |
| ? | NC_000913 | 435911 = | 125 (1.170) | coding (278/978 nt) | thiL | thiamine monophosphate kinase | |||||