mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,111,747 | 0 | G | T | 45.8% | 19.5 / 22.7 | 24 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 4,604,344 | 0 | C | T | 32.1% | 72.1 / 25.6 | 53 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.6% | 106.1 / 39.2 | 58 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,206,435 | 0 | C | T | 24.2% | 65.7 / 11.2 | 33 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 2,326,450 | 0 | T | G | 24.1% | 109.4 / 33.2 | 54 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 1,181,345 | 0 | G | T | 20.8% | 149.7 / 28.8 | 53 | G127G (GGC→GGA) | ymfA | putative inner membrane protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 32 (0.510) | 9 (0.150) | 9/258 | 3.4 | 15.4% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 69 (1.180) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 33 (0.530) | 7 (0.120) | 7/258 | 4.0 | 12.3% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 69 (1.180) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 381515 = | NA (NA) | 4 (0.070) | 4/264 | 5.2 | NA | noncoding (256/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381510 | NA (NA) | noncoding (251/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1121243 = | 79 (1.260) | 3 (0.050) | 3/268 | 5.7 | 3.7% | coding (245/246 nt) | dinI | DNA damage‑inducible protein I |
| ? | NC_000913 | = 1121239 | 78 (1.280) | intergenic (‑284/+3) | bssS/dinI | regulator of biofilm formation/DNA damage‑inducible protein I | |||||