mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,556,205 | 0 | A | C | 53.8% | 1.6 / 15.3 | 13 | S215R (AGT→AGG) ‡ | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 3,556,207 | 0 | T | C | 53.8% | ‑2.1 / 11.8 | 13 | S215G (AGT→GGT) ‡ | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 4,111,747 | 0 | G | T | 33.3% | 40.9 / 10.5 | 21 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 4,296,060 | 0 | C | T | 24.2% | 66.1 / 16.5 | 33 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,326,450 | 0 | T | G | 20.0% | 81.5 / 12.8 | 35 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 374922 = | NA (NA) | 4 (0.120) | 3/202 | 3.6 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377430 = | NA (NA) | intergenic (+119/+105) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 377321 = | NA (NA) | 9 (0.200) | 5/274 | 3.7 | NA | intergenic (+10/+214) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| ? | NC_000913 | 4325851 = | NA (NA) | intergenic (‑110/+548) | yjdN/yjdM | conserved protein YjdN/conserved protein YjdM | |||||
| * | ? | NC_000913 | = 3690077 | 36 (0.810) | 4 (0.090) | 4/264 | 3.9 | 7.6% | coding (185/1107 nt) | bcsZ | endo‑1,4‑D‑glucanase |
| ? | NC_000913 | 3846216 = | 63 (1.480) | coding (952/1392 nt) | uhpT | hexose‑6‑phosphate:phosphate antiporter | |||||
| * | ? | NC_000913 | 608007 = | NA (NA) | 4 (0.110) | 3/224 | 3.9 | 8.7% | noncoding (1/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 609352 = | 42 (1.160) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
| * | ? | NC_000913 | = 375059 | NA (NA) | 5 (0.110) +T |
4/274 | 4.0 | NA | noncoding (28/34 nt) | other | REP31c |
| ? | NC_000913 | = 377491 | NA (NA) | noncoding (32/34 nt) | other | REP32d | |||||
| * | ? | NC_000913 | = 4542690 | 40 (0.900) | 4 (0.100) | 3/258 | 4.3 | 8.4% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 50 (1.200) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4373296 | NA (NA) | 3 (0.070) | 3/256 | 4.3 | NA | noncoding (1/34 nt) | other | REP328b |
| ? | NC_000913 | = 4374496 | NA (NA) | intergenic (‑262/+133) | yjeJ/epmB | protein YjeJ/lysine 2,3‑aminomutase | |||||
| * | ? | NC_000913 | = 4188104 | 44 (0.990) | 3 (0.070) | 3/272 | 4.4 | 5.8% | coding (2755/4224 nt) | rpoC | RNA polymerase subunit beta' |
| ? | NC_000913 | 4190126 = | 54 (1.230) | coding (341/540 nt) | yjaZ | conserved protein YjaZ | |||||
| * | ? | NC_000913 | 3921142 = | 72 (1.620) | 3 (0.070) | 3/266 | 4.4 | 4.1% | coding (48/240 nt) | atpE | ATP synthase Fo complex subunit c |
| ? | NC_000913 | = 3921138 | 70 (1.630) | coding (52/240 nt) | atpE | ATP synthase Fo complex subunit c | |||||