mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 634,335 | G→A | A250A (GCG→GCA) | ybdL → | methionine‑oxo‑acid transaminase, PLP‑dependent |
| RA | 666,155 | G→T | I53I (ATC→ATA) | mrdB ← | SEDS family protein MrdB |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,893,395 | C→A | A10D (GCC→GAC) | yoaB → | RutC family protein YoaB |
| RA | 1,951,592 | G→T | A66A (GCG→GCT) | yecE → | DUF72 domain‑containing protein YecE |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,351,070 | C→A | M435I (ATG→ATT) | glpT ← | sn‑glycerol 3‑phosphate:phosphate antiporter |
| RA | 2,372,314 | C→A | R469R (CGC→CGA) | arnT → | lipid IVA 4‑amino‑4‑deoxy‑L‑arabinosyltransferase |
| RA | 2,567,832 | C→A | S92S (TCG→TCT) | eutH ← | putative inner membrane protein |
| RA | 2,652,671 | G→T | D60Y (GAT→TAT) | sseA → | 3‑mercaptopyruvate sulfurtransferase |
| RA | 3,006,039 | C→A | intergenic (‑253/‑223) | ygeV ← / → ygeW | putative sigma(54)‑dependent transcriptional regulator YgeV/putative carbamoyltransferase YgeW |
| RA | 3,200,238 | C→A | W243L (TGG→TTG) | ygiF ← | inorganic triphosphatase |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,594,875 | G→T | G202G (GGC→GGA) | livM ← | branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM |
| RA | 3,629,295 | G→T | R82S (CGC→AGC) | rbbA ← | ribosome‑associated ATPase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,411,207 | G→A | A219T (GCC→ACC) | yjfJ → | putative transcriptional regulator effector protein |
| RA | 4,554,376 | T→C | intergenic (+15/‑200) | uxuB → / → uxuR | D‑mannonate oxidoreductase/DNA‑binding transcriptional repressor UxuR |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102978 | 3104051 | 1074 | 10 [8] | [7] 12 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423766–3424234 | 3424545–3424238 | 5–780 | 10 [8] | [8] 10 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 340035 = | NA (NA) | 10 (0.230) | 8/274 | 2.8 | NA | coding (243/297 nt) | yahH | putative uncharacterized protein YahH |
| ? | NC_000913 | 377322 = | NA (NA) | intergenic (+11/+213) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 1207790 = | 13 (0.290) | 55 (1.400) | 35/244 | 0.1 | 82.4% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 12 (0.300) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 13 (0.290) | 28 (0.710) | 25/244 | 0.5 | 70.5% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 12 (0.300) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 3363001 = | 75 (1.680) | 76 (1.720) | 52/274 | 0.0 | 66.5% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 2 (0.050) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 52 (1.170) | 41/276 | 0.1 | 96.3% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 2 (0.040) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||