Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,219,328 IS2 (+) +5 bp intergenic (+127/‑269) ymgF → / → ycgH inner membrane protein that interacts with cell division proteins/putative transporter component, N‑terminal fragment

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1219328 =1 (0.010)109 (1.440) 69/276 0.0 99.1% intergenic (+127/‑273) ymgF/ycgH inner membrane protein that interacts with cell division proteins/putative transporter component, N‑terminal fragment
?NC_000913 1467910 = NA (NA)noncoding (1331/1331 nt) IS2 repeat region
* ? NC_000913 = 12193321 (0.010)103 (1.360) 63/276 0.1 99.0% intergenic (+131/‑269) ymgF/ycgH inner membrane protein that interacts with cell division proteins/putative transporter component, N‑terminal fragment
?NC_000913 = 1469240 NA (NA)noncoding (1/1331 nt) IS2 repeat region

Only 100 of 210 total aligned reads displayed.

AGCAATAATCTTTCAGTTTCTCACTGTCAGTATGCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATGATAATGCCGACTTATTTATCATTTAT  >  NC_000913/1219194‑1219469
                                                                                                                                          |                                                                                                                                         
aGCAATAATCTTTCAGTTTCTCACTGTCAGTATGCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCt                                                                                                                                          >  1:861819‑M1/1‑139 (MQ=255)
 aggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTTATCAc                                                                                                                                         >  1:854530‑M1/134‑140 (MQ=255)
 aggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCAc                                                                                                                                         >  2:415579‑M1/134‑140 (MQ=255)
 aggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCAc                                                                                                                                         >  1:1257552‑M1/134‑140 (MQ=255)
   gcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCAc                                                                                                                                         >  1:68649‑M1/132‑138 (MQ=255)
   gcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCAc                                                                                                                                         <  2:68649‑M1/7‑1 (MQ=255)
   gcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCg                                                                                                                                       <  1:897607‑M1/9‑1 (MQ=255)
   aataatCTTTCAGTTTCTCACTGTCAGTATGCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtaga                                                                                                                                       <  1:500201‑M1/140‑5 (MQ=255)
      ttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGaaa                                                                                                                                    <  2:1247214‑M1/12‑1 (MQ=255)
         cTTTCAGTTTCTCACTGTCAGTATGCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggcc                                                                                                                                 <  1:1020519‑M1/140‑11 (MQ=255)
            tCAGTTTCTCACTGTCAGTATGCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccc                                                                                                                              >  1:1119874‑M1/1‑127 (MQ=255)
            tCAGTTTCTCACTGTCAGTATGCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccc                                                                                                                              <  1:307688‑M1/140‑14 (MQ=255)
             cAGTTTCTCACTGTCAGTATGCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccct                                                                                                                             >  1:130152‑M1/1‑126 (MQ=255)
                   ctcACTGTCAGTATGCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatct                                                                                                                       <  1:626127‑M1/140‑21 (MQ=255)
                     cACTGTCAGTATGCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctcc                                                                                                                     <  2:87612‑M1/140‑23 (MQ=255)
                        tGTCAGTATGCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccaga                                                                                                                  >  1:572964‑M1/1‑115 (MQ=255)
                         ggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCa                                                                                                                      <  1:1224598‑M1/26‑1 (MQ=255)
                         ggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTAt                                                                                                                 <  2:1278221‑M1/31‑1 (MQ=255)
                         ggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTAt                                                                                                                 <  1:800177‑M1/31‑1 (MQ=255)
                          ggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatatagggcaaatccaATATCACCGAAATAATCCTCATCGCAACTAtt                                                                                                                >  1:923465‑M1/109‑140 (MQ=255)
                            aGTATGCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaac                                                                                                              >  1:1172052‑M1/1‑111 (MQ=255)
                            aGTATGCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaac                                                                                                              >  1:313631‑M1/1‑111 (MQ=255)
                              tATGCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaacca                                                                                                            >  2:427698‑M1/1‑109 (MQ=255)
                              ccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACa                                                                                                            <  2:955227‑M1/36‑1 (MQ=255)
                                  cGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatat                                                                                                        >  1:1265102‑M1/1‑105 (MQ=255)
                                  cGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaat                                                                                                                         <  2:1097249‑M1/123‑19 (MQ=255)
                                    gCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatc                                                                                                       >  2:120587‑M1/1‑103 (MQ=255)
                                    gCTGAATGGGTTGCTGGCAATGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatca                                                                                                      >  1:459646‑M1/1‑103 (MQ=255)
                                      tgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGAt                                                                                                    <  1:738354‑M1/44‑1 (MQ=255)
                                       gAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcactt                                                                                                   <  2:861819‑M1/140‑41 (MQ=255)
                                       gAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcactt                                                                                                   <  2:287928‑M1/140‑41 (MQ=255)
                                        cgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGt                                                                                                  <  1:1184369‑M1/46‑1 (MQ=255)
                                        aaTGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcactta                                                                                                  >  1:109703‑M1/1‑99 (MQ=255)
                                        aaTGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcactta                                                                                                  >  2:225043‑M1/1‑99 (MQ=255)
                                         gctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTc                                                                                                 <  1:441837‑M1/47‑1 (MQ=255)
                                             gTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaat                                                                                               >  1:355942‑M1/1‑94 (MQ=255)
                                                  tGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgat                                                                                        <  2:313631‑M1/140‑52 (MQ=255)
                                                   ggCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgata                                                                                       <  2:1119874‑M1/140‑53 (MQ=255)
                                                     cAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagt                                                                                     <  2:459909‑M1/140‑55 (MQ=255)
                                                       gTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtct                                                                                   <  2:722799‑M1/140‑57 (MQ=255)
                                                        tGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGtt                                                                                  >  2:800302/1‑140 (MQ=255)
                                                           aCGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaat                                                                               >  2:1105913‑M1/1‑80 (MQ=255)
                                                              ccTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatact                                                                            <  1:371046‑M1/140‑64 (MQ=255)
                                                              ccTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatact                                                                            <  1:615272‑M1/140‑64 (MQ=255)
                                                               cTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatacta                                                                           >  2:276588‑M1/1‑76 (MQ=255)
                                                                  gATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtt                                                                        >  2:365342‑M1/1‑73 (MQ=255)
                                                                  gATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtt                                                                        >  1:282658‑M1/1‑73 (MQ=255)
                                                                  gATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgat                                                                                        >  1:1068240‑M1/1‑73 (MQ=255)
                                                                  gATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgat                                                                                        <  2:1068240‑M1/124‑52 (MQ=255)
                                                                   atctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCg                                                                       >  1:643743‑M1/68‑140 (MQ=255)
                                                                   atctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCAACGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCg                                                                       >  2:1172430‑M1/68‑140 (MQ=255)
                                                                    tctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGt                                                                      >  1:1278221‑M1/67‑140 (MQ=255)
                                                                    tctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGt                                                                      >  2:738354‑M1/67‑140 (MQ=255)
                                                                     cATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttt                                                                     <  2:805745‑M1/140‑71 (MQ=255)
                                                                       ttGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttag                                                                   >  1:43676‑M1/1‑68 (MQ=255)
                                                                          gcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTc                                                                >  2:13092‑M1/61‑140 (MQ=255)
                                                                           cagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCa                                                               >  2:441837‑M1/60‑140 (MQ=255)
                                                                            agcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCaa                                                              >  2:1184369‑M1/59‑140 (MQ=255)
                                                                             gAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagt                                                             <  2:1170559‑M1/140‑79 (MQ=255)
                                                                             gAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagt                                                             <  2:1245176‑M1/140‑79 (MQ=255)
                                                                              cgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAg                                                            <  1:1001450‑M1/84‑1 (MQ=255)
                                                                              cgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAg                                                            <  2:197314‑M1/84‑1 (MQ=255)
                                                                                  cttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGAt                                                        >  1:964268‑M1/53‑140 (MQ=255)
                                                                                      taatgggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAAt                                                    >  2:62839‑M1/49‑140 (MQ=255)
                                                                                       attGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaa                                                   >  2:616921‑M1/1‑52 (MQ=255)
                                                                                           ggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCAt                                               <  2:175951‑M1/97‑1 (MQ=255)
                                                                                           ggttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCAt                                               <  1:986190‑M1/97‑1 (MQ=255)
                                                                                            gttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATg                                              >  1:773341‑M1/43‑140 (MQ=255)
                                                                                             ttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGa                                             <  2:795234‑M1/99‑1 (MQ=255)
                                                                                             ttaagtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGa                                             <  2:33526‑M1/99‑1 (MQ=255)
                                                                                                agtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGaaaa                                          <  2:1229444‑M1/102‑1 (MQ=255)
                                                                                                agtgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGaaaa                                          <  2:594800‑M1/102‑1 (MQ=255)
                                                                                                aTAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgatt                                          >  2:912029‑M1/1‑43 (MQ=255)
                                                                                                  tgataacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATa                                        >  2:842991‑M1/37‑140 (MQ=255)
                                                                                                     taacagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAgg                                     >  1:1211729‑M1/34‑140 (MQ=255)
                                                                                                       acagatgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTg                                   <  1:809105‑M1/109‑1 (MQ=255)
                                                                                                            tgtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGaaaaa                              <  1:728862‑M1/114‑1 (MQ=255)
                                                                                                             gtctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTg                                   <  2:883705‑M1/109‑1 (MQ=255)
                                                                                                              tctggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATg                            <  2:582780‑M1/116‑1 (MQ=255)
                                                                                                                tggaaatataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATGAt                          <  1:143406‑M1/118‑1 (MQ=255)
                                                                                                                     atataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATGa                           <  2:93412‑M1/117‑1 (MQ=255)
                                                                                                                     atataggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATGa                           >  1:93412‑M1/18‑134 (MQ=255)
                                                                                                                     aTCACGGTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaa                     >  2:1218085‑M1/1‑22 (MQ=255)
                                                                                                                          ggggcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGaaaaa                              >  1:530184‑M1/13‑126 (MQ=255)
                                                                                                                          ggTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcag                >  2:642996‑M1/1‑17 (MQ=255)
                                                                                                                          ggTTGTTTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgatgatgtcttagggccggagaaacgcaga                <  1:194069‑M1/140‑124 (MQ=255)
                                                                                                                             tgttTTTATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacg             <  2:282026‑M1/140‑127 (MQ=255)
                                                                                                                             gcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATGATAATGCCg                   <  2:513254‑M1/125‑1 (MQ=255)
                                                                                                                             gcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATGATAATGCCGACttat             <  2:561658‑M1/131‑1 (MQ=255)
                                                                                                                             gcaaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATGATAATGCCGACttat             <  1:23142‑M1/131‑1 (MQ=255)
                                                                                                                               aaatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATGATAATGCCGACttattt           <  1:539252‑M1/133‑1 (MQ=255)
                                                                                                                                aatccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATGATAATGCCGACttattta          >  1:175951‑M1/7‑140 (MQ=255)
                                                                                                                                 atccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATGATAATGCCGACttatttat         >  1:33526‑M1/6‑140 (MQ=255)
                                                                                                                                  ttATATATCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttaggccggagaaacgcagacggcgtac        <  1:1105913‑M1/140‑132 (MQ=255)
                                                                                                                                   tatataTCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtac       <  2:343757‑M1/140‑133 (MQ=255)
                                                                                                                                   ccaATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATGATAATGCCGACTTATTTATCa       >  2:1084315‑M1/4‑140 (MQ=255)
                                                                                                                                      atatCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATGATAATGCCGACTTATTTATCAttt    <  2:728862/140‑1 (MQ=255)
                                                                                                                                      atatCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCATCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATGATAATGCCGACTTATTTATCAttt    >  1:1078258/1‑140 (MQ=255)
                                                                                                                                        atCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacac  >  1:1147771‑M1/1‑3 (MQ=255)
                                                                                                                                          ctagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccaca   >  1:423340‑M1/1‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                         
AGCAATAATCTTTCAGTTTCTCACTGTCAGTATGCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAAGAGTTATTTGTTAAACAAAATCGTCACCTCAAAGTGATCAATGTCATGAAAATAAGGTGAAAAATGATAATGCCGACTTATTTATCATTTAT  >  NC_000913/1219194‑1219469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.